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The map label for this gene is 54294775

Identifier: 54294775

GI number: 54294775

Start: 2072881

End: 2074542

Strand: Reverse

Name: 54294775

Synonym: lpl1852

Alternate gene names: NA

Gene position: 2074542-2072881 (Counterclockwise)

Preceding gene: 54294778

Following gene: 54294773

Centisome position: 62.01

GC content: 35.32

Gene sequence:

>1662_bases
ATGCCCCTTACTTCGTTAAAAAAATTTTTAAAAGATATTGGAAAGGACAAGATAAAACAGCATCAGGTAAAACTTGTTTT
AAAAACATCTCAGGATATTCAATTATTTTTAAATGCTTTGCGAGATTCGAGAAACCACGGAATCTCGTCCTTATCTGAAC
TTGATCTAAGCAATACTCGCTTTACTAATCAAGAGTTAAGTGATTTAGTCACGGCCCTTAATAATATACCTGGAATTAAA
TCTTTACGTTTGGATTCTTGTGGTCTTAAGGATAGTGACACAGTGGAGCTTTTCAAATTAACGCACATCAAAAAATTATC
ATTGAAAAGTAATTACTTAAAGAACCGCCCTATGTTTAATTCTATGCTTGAAGCGTTATATTTGGATTATAATACAGAAC
TTAGCGCAAGTTATGTATTATTTAGTTTAAGTCGCAATGCTGCTGCTTTAAAAAAATTATCCTTGCGTAATTGTGGTGTT
ACTGATGCTAATTTAGAGTATTTGACTCGGCCTGAGTCGAGGTTAAAAAGTCTGACACACTTTAATTTGCGAAGAAATAA
TATTACTCACCAAGGAGTAGATAGCATTGCTCATCTTCAATCGTTGACTACTATTGATTTAAGTCAAAATACTGGAATTG
GTGATGAGGGTGTATCCAGGCTTGCGCCTTTAAAGCAGTTAAGAACCCTGTATTTGGATAATTGTGGAATAGGGGCAGAG
GGAATTAAGGCAATTGCCAAAATGAATTTGCAGACTGTTGATTTGAGTTTCAATCCCGGGTTAAAAAAAGAATGGGGATT
GGATGACATTCGACCTAATCATACCATTCGAACATTATTGTTAACATTTTGCAGCTTAAATGATAATCATGCCAAGCTTA
TTGTTTCGAAGTTTCCAGCGGCTACTGATTTAAATGTTGCGAATAATAATATGACCAGGGCAGGGGTAAAGACTTTATTG
AGTAACCCGATTATAGAAAATTTGGATGTCAGTACCCAATCGCTTTATGCAAAAGCAACAGGAGCTTCTGGTACTGGTAT
GATCTCTCCCCGAATAATGATGAAGAAAAAGGAAATAAAACAACAGGAAAAAGAAAAAGCGCAAGATTTGCTAGATACTA
TTTGTAATACAATCACACTAAAGAGTATTAATCTGGAACATACAGGCATAACCTCCAGGATGTTATTGAGTTTAATTCCA
GATGAAACAGATCACAAACGGTATCTTAAGAAAATTAATGGTGTTTCCTGTAAAGAGCTTAAGCCAAAATTAGAACAACA
AATTGCCTTGAGAAAAGCTGAAAAACAAAGTTCTCCTCCTGAAATCATTGCAGTGGAAGATTCCAAACCAAGTGCTTTAA
TGATTAAATCTGGAAGTAGTTCCAAGACTGAGGCGCAAACCAGAGAAGATGGCTTGATAACCAGTCCTGATGAAAAAATA
AAAGCTCTGGAACTAGAGAATCAAAAATTAAAGGATGAATTGTCAACAGCTCGTAAAAGAATTTTTGAATTGGAAAATCA
GTCTTTATCTGGATCCAAAACAAGAAAAAAAACCTCAATACCACCATTGGCAATCCCGGTGATGTTTCAGGATTTTGCAA
AACCAGGAAAAAATGAAACAGATGACAACATCAGCAACTCAAGAACGGCAATCCCCAAATAG

Upstream 100 bases:

>100_bases
CAATTCTTATGGTTTTCTTAAGCGTTGAAATGTATAATAGATGATCTTTGAGTTAAATATATTACCAAACAGGAATTTTT
TGTTTATATTTGGAGACAAT

Downstream 100 bases:

>100_bases
CACAATTATTGTAAATGCATTCAGCATGACTAACATCCACTTGGATGTTAGTCATGTATTGTTTTACTTTTTCTTGCCAA
AAATCTGAGTTAAGTGACCA

Product: hypothetical protein

Products: NA

Alternate protein names: Leucine-Rich-Repeat Type III Effector Protein

Number of amino acids: Translated: 553; Mature: 552

Protein sequence:

>553_residues
MPLTSLKKFLKDIGKDKIKQHQVKLVLKTSQDIQLFLNALRDSRNHGISSLSELDLSNTRFTNQELSDLVTALNNIPGIK
SLRLDSCGLKDSDTVELFKLTHIKKLSLKSNYLKNRPMFNSMLEALYLDYNTELSASYVLFSLSRNAAALKKLSLRNCGV
TDANLEYLTRPESRLKSLTHFNLRRNNITHQGVDSIAHLQSLTTIDLSQNTGIGDEGVSRLAPLKQLRTLYLDNCGIGAE
GIKAIAKMNLQTVDLSFNPGLKKEWGLDDIRPNHTIRTLLLTFCSLNDNHAKLIVSKFPAATDLNVANNNMTRAGVKTLL
SNPIIENLDVSTQSLYAKATGASGTGMISPRIMMKKKEIKQQEKEKAQDLLDTICNTITLKSINLEHTGITSRMLLSLIP
DETDHKRYLKKINGVSCKELKPKLEQQIALRKAEKQSSPPEIIAVEDSKPSALMIKSGSSSKTEAQTREDGLITSPDEKI
KALELENQKLKDELSTARKRIFELENQSLSGSKTRKKTSIPPLAIPVMFQDFAKPGKNETDDNISNSRTAIPK

Sequences:

>Translated_553_residues
MPLTSLKKFLKDIGKDKIKQHQVKLVLKTSQDIQLFLNALRDSRNHGISSLSELDLSNTRFTNQELSDLVTALNNIPGIK
SLRLDSCGLKDSDTVELFKLTHIKKLSLKSNYLKNRPMFNSMLEALYLDYNTELSASYVLFSLSRNAAALKKLSLRNCGV
TDANLEYLTRPESRLKSLTHFNLRRNNITHQGVDSIAHLQSLTTIDLSQNTGIGDEGVSRLAPLKQLRTLYLDNCGIGAE
GIKAIAKMNLQTVDLSFNPGLKKEWGLDDIRPNHTIRTLLLTFCSLNDNHAKLIVSKFPAATDLNVANNNMTRAGVKTLL
SNPIIENLDVSTQSLYAKATGASGTGMISPRIMMKKKEIKQQEKEKAQDLLDTICNTITLKSINLEHTGITSRMLLSLIP
DETDHKRYLKKINGVSCKELKPKLEQQIALRKAEKQSSPPEIIAVEDSKPSALMIKSGSSSKTEAQTREDGLITSPDEKI
KALELENQKLKDELSTARKRIFELENQSLSGSKTRKKTSIPPLAIPVMFQDFAKPGKNETDDNISNSRTAIPK
>Mature_552_residues
PLTSLKKFLKDIGKDKIKQHQVKLVLKTSQDIQLFLNALRDSRNHGISSLSELDLSNTRFTNQELSDLVTALNNIPGIKS
LRLDSCGLKDSDTVELFKLTHIKKLSLKSNYLKNRPMFNSMLEALYLDYNTELSASYVLFSLSRNAAALKKLSLRNCGVT
DANLEYLTRPESRLKSLTHFNLRRNNITHQGVDSIAHLQSLTTIDLSQNTGIGDEGVSRLAPLKQLRTLYLDNCGIGAEG
IKAIAKMNLQTVDLSFNPGLKKEWGLDDIRPNHTIRTLLLTFCSLNDNHAKLIVSKFPAATDLNVANNNMTRAGVKTLLS
NPIIENLDVSTQSLYAKATGASGTGMISPRIMMKKKEIKQQEKEKAQDLLDTICNTITLKSINLEHTGITSRMLLSLIPD
ETDHKRYLKKINGVSCKELKPKLEQQIALRKAEKQSSPPEIIAVEDSKPSALMIKSGSSSKTEAQTREDGLITSPDEKIK
ALELENQKLKDELSTARKRIFELENQSLSGSKTRKKTSIPPLAIPVMFQDFAKPGKNETDDNISNSRTAIPK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 61577; Mature: 61446

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLTSLKKFLKDIGKDKIKQHQVKLVLKTSQDIQLFLNALRDSRNHGISSLSELDLSNTR
CCHHHHHHHHHHHCHHHHHHHHEEEEEECCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCC
FTNQELSDLVTALNNIPGIKSLRLDSCGLKDSDTVELFKLTHIKKLSLKSNYLKNRPMFN
CCHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHH
SMLEALYLDYNTELSASYVLFSLSRNAAALKKLSLRNCGVTDANLEYLTRPESRLKSLTH
HHHHHHHHCCCCCCCCEEEEEEECCCHHHHHHHHHHCCCCCCCCHHHHCCCHHHHHHHHH
FNLRRNNITHQGVDSIAHLQSLTTIDLSQNTGIGDEGVSRLAPLKQLRTLYLDNCGIGAE
HHHHCCCCCHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHH
GIKAIAKMNLQTVDLSFNPGLKKEWGLDDIRPNHTIRTLLLTFCSLNDNHAKLIVSKFPA
HHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCC
ATDLNVANNNMTRAGVKTLLSNPIIENLDVSTQSLYAKATGASGTGMISPRIMMKKKEIK
CCCCCCCCCCCHHHHHHHHHCCCCHHCCCCCHHHHEEEECCCCCCCCCCCHHHHHHHHHH
QQEKEKAQDLLDTICNTITLKSINLEHTGITSRMLLSLIPDETDHKRYLKKINGVSCKEL
HHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHH
KPKLEQQIALRKAEKQSSPPEIIAVEDSKPSALMIKSGSSSKTEAQTREDGLITSPDEKI
HHHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEECCCCCCCHHHHHCCCCCCCCHHHH
KALELENQKLKDELSTARKRIFELENQSLSGSKTRKKTSIPPLAIPVMFQDFAKPGKNET
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEHHHHHHHHCCCCCCCC
DDNISNSRTAIPK
CCCCCCCCCCCCC
>Mature Secondary Structure 
PLTSLKKFLKDIGKDKIKQHQVKLVLKTSQDIQLFLNALRDSRNHGISSLSELDLSNTR
CHHHHHHHHHHHCHHHHHHHHEEEEEECCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCC
FTNQELSDLVTALNNIPGIKSLRLDSCGLKDSDTVELFKLTHIKKLSLKSNYLKNRPMFN
CCHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHH
SMLEALYLDYNTELSASYVLFSLSRNAAALKKLSLRNCGVTDANLEYLTRPESRLKSLTH
HHHHHHHHCCCCCCCCEEEEEEECCCHHHHHHHHHHCCCCCCCCHHHHCCCHHHHHHHHH
FNLRRNNITHQGVDSIAHLQSLTTIDLSQNTGIGDEGVSRLAPLKQLRTLYLDNCGIGAE
HHHHCCCCCHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHH
GIKAIAKMNLQTVDLSFNPGLKKEWGLDDIRPNHTIRTLLLTFCSLNDNHAKLIVSKFPA
HHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCC
ATDLNVANNNMTRAGVKTLLSNPIIENLDVSTQSLYAKATGASGTGMISPRIMMKKKEIK
CCCCCCCCCCCHHHHHHHHHCCCCHHCCCCCHHHHEEEECCCCCCCCCCCHHHHHHHHHH
QQEKEKAQDLLDTICNTITLKSINLEHTGITSRMLLSLIPDETDHKRYLKKINGVSCKEL
HHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHH
KPKLEQQIALRKAEKQSSPPEIIAVEDSKPSALMIKSGSSSKTEAQTREDGLITSPDEKI
HHHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEECCCCCCCHHHHHCCCCCCCCHHHH
KALELENQKLKDELSTARKRIFELENQSLSGSKTRKKTSIPPLAIPVMFQDFAKPGKNET
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEHHHHHHHHCCCCCCCC
DDNISNSRTAIPK
CCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA