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The map label for this gene is fliR [H]

Identifier: 54294674

GI number: 54294674

Start: 1956404

End: 1957174

Strand: Reverse

Name: fliR [H]

Synonym: lpl1751

Alternate gene names: 54294674

Gene position: 1957174-1956404 (Counterclockwise)

Preceding gene: 54294675

Following gene: 54294673

Centisome position: 58.5

GC content: 37.74

Gene sequence:

>771_bases
ATGAATCTCGATTATCAAACTATGATTCGCTTAATGAGCCAATTTATTTGGCCAATGGTGCGTATTGGTGGTTTGATGCT
TACGGTGCCGGTTTTATCGTCAGCACTATTGCCGGCACGTATTAAAATTCTCTTTGTTTTTACTTTAAGCTGTGTGTGTT
TTACCTATGTGCCTCATAACTTGTCTTTCGAAAATTTTAATGGTCTTTATCTTGTCTATCTCATACAGGAATTATTATTG
GGTTTGTTAATGGGATTTGTGTTGCAAATAGTATTTCAAGTATTCATTCTTGGGGGGCAAATTATATCCATGCAGGCGGG
GTTGGGATTTGCGGTAATGGTCGATCCAACCAGTAATGCCAGTGTGCCTTTAATCAGTCAATTGTATTTAATGGTGACCA
CATTAATATTTTTGGCATTGAATGGCCATTTAGCTATTCTCGAAACTCTAATCGAGAGTTTTAGAATAATGCCAATCGGT
AAATCTTCTCTGGATCCATCAATTATCTGGAGTACGATCATGTTTTCAGGTTGGATGTTCAAAGAAGCAGTATTGATTTC
AATTCCTGCGATTTTATCTTTGCTTATTGTAAGCTTGTCTTTTGGAGTTATGGCTCGGGTTGCTCCGCAATTAAACCTTT
TCTCTTTAGGTTTTCCGATTACGCTATTGATGGGGTTTGTCATCATTAAAATAGGTTTGCCCACTGTCGGGACAGAAATG
GTAGAGAGCATTAAGCATGGAATCCAATTTATAACAGGAATATTGCGCTGA

Upstream 100 bases:

>100_bases
CTTTTTGGTTCTTATTTTAGCAGGGCCTTGGTTATTAAAGACATTGATAAATTATACAGATACTTTGATAAGCAATATTC
CTTATTTGATTGGATAAAAA

Downstream 100 bases:

>100_bases
TGGCCGATGAAGAACAATCACAAGAAAAAACGGAACAGCCTTCTTCCAAGCGATTAAAAGAATCACGAAAAAAAGGGCAG
GTTGCACGTTCCAAAGATTT

Product: flagellar biosynthetic protein fliR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 256

Protein sequence:

>256_residues
MNLDYQTMIRLMSQFIWPMVRIGGLMLTVPVLSSALLPARIKILFVFTLSCVCFTYVPHNLSFENFNGLYLVYLIQELLL
GLLMGFVLQIVFQVFILGGQIISMQAGLGFAVMVDPTSNASVPLISQLYLMVTTLIFLALNGHLAILETLIESFRIMPIG
KSSLDPSIIWSTIMFSGWMFKEAVLISIPAILSLLIVSLSFGVMARVAPQLNLFSLGFPITLLMGFVIIKIGLPTVGTEM
VESIKHGIQFITGILR

Sequences:

>Translated_256_residues
MNLDYQTMIRLMSQFIWPMVRIGGLMLTVPVLSSALLPARIKILFVFTLSCVCFTYVPHNLSFENFNGLYLVYLIQELLL
GLLMGFVLQIVFQVFILGGQIISMQAGLGFAVMVDPTSNASVPLISQLYLMVTTLIFLALNGHLAILETLIESFRIMPIG
KSSLDPSIIWSTIMFSGWMFKEAVLISIPAILSLLIVSLSFGVMARVAPQLNLFSLGFPITLLMGFVIIKIGLPTVGTEM
VESIKHGIQFITGILR
>Mature_256_residues
MNLDYQTMIRLMSQFIWPMVRIGGLMLTVPVLSSALLPARIKILFVFTLSCVCFTYVPHNLSFENFNGLYLVYLIQELLL
GLLMGFVLQIVFQVFILGGQIISMQAGLGFAVMVDPTSNASVPLISQLYLMVTTLIFLALNGHLAILETLIESFRIMPIG
KSSLDPSIIWSTIMFSGWMFKEAVLISIPAILSLLIVSLSFGVMARVAPQLNLFSLGFPITLLMGFVIIKIGLPTVGTEM
VESIKHGIQFITGILR

Specific function: Role in flagellar biosynthesis [H]

COG id: COG1684

COG function: function code NU; Flagellar biosynthesis pathway, component FliR

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential). Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliR/mopE/spaR family [H]

Homologues:

Organism=Escherichia coli, GI1788261, Length=224, Percent_Identity=31.25, Blast_Score=112, Evalue=2e-26,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006303
- InterPro:   IPR002010 [H]

Pfam domain/function: PF01311 Bac_export_1 [H]

EC number: NA

Molecular weight: Translated: 28312; Mature: 28312

Theoretical pI: Translated: 8.22; Mature: 8.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
5.9 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
5.9 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLDYQTMIRLMSQFIWPMVRIGGLMLTVPVLSSALLPARIKILFVFTLSCVCFTYVPHN
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
LSFENFNGLYLVYLIQELLLGLLMGFVLQIVFQVFILGGQIISMQAGLGFAVMVDPTSNA
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEECCCCEEEEECCCCCC
SVPLISQLYLMVTTLIFLALNGHLAILETLIESFRIMPIGKSSLDPSIIWSTIMFSGWMF
CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHCHHH
KEAVLISIPAILSLLIVSLSFGVMARVAPQLNLFSLGFPITLLMGFVIIKIGLPTVGTEM
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHHHCCCCCCHHH
VESIKHGIQFITGILR
HHHHHHHHHHHHHHHC
>Mature Secondary Structure
MNLDYQTMIRLMSQFIWPMVRIGGLMLTVPVLSSALLPARIKILFVFTLSCVCFTYVPHN
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
LSFENFNGLYLVYLIQELLLGLLMGFVLQIVFQVFILGGQIISMQAGLGFAVMVDPTSNA
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEECCCCEEEEECCCCCC
SVPLISQLYLMVTTLIFLALNGHLAILETLIESFRIMPIGKSSLDPSIIWSTIMFSGWMF
CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHCHHH
KEAVLISIPAILSLLIVSLSFGVMARVAPQLNLFSLGFPITLLMGFVIIKIGLPTVGTEM
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHHHCCCCCCHHH
VESIKHGIQFITGILR
HHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12522265 [H]