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The map label for this gene is potC [H]

Identifier: 54294082

GI number: 54294082

Start: 1276041

End: 1276808

Strand: Reverse

Name: potC [H]

Synonym: lpl1146

Alternate gene names: 54294082

Gene position: 1276808-1276041 (Counterclockwise)

Preceding gene: 54294083

Following gene: 54294081

Centisome position: 38.16

GC content: 38.54

Gene sequence:

>768_bases
ATGAAAACAATGACACAGCGCCTGTTTCTTTCTTTAGTTTATGCTTTTCTTTATATCCCCATTGCGATACTGGTGCTCTA
TTCAGTAAATGATGCCAAATTTTCATTACAATGGCATGGGTTTTCTTTGCGATGGTACAAAGAACTATTTCATGATCGGG
GCTTGTGGTCTGCTGTTTTCAATTCTATCACCTTGGGGCTAACATCTTCTCTTATCGCTACAACAATGGGACTATTGGCC
TCAATCAACTTATTTTTATTTCGTACAAGACACCGCCAGATCCTGTATACCTTATTACTATTACTTATTATTATTCCTGA
CATAGTCCTGGGTGTTGCCTTATTAATTTTCTTTAATATTACCCAAGTACCGCTTGGCTTCTTAAGCCTTTTAGTTGCCC
ATATTACGTTCTCCATTCCTTTTGTTATCTTGACCATTAATTCACGAATAAACACTTTAAATCCCAATGTTTATTTTGGC
GCCCTCGATCTTGGCGCCAGTCGTTATTTTGCTTTAACGAGAGTCTTGCTTCCTTTATTGTGGCCTGCGGTTTTAAGCGC
TTTTTTACTAAGTTTCACTTTGTCATTTGATGACGTCATTATCAGCTATTTTGTGGCAGGCCCTGATTTTACTATCCTGC
CTTTGACCATCTACTCTTTAGTCCGTGCTGGCGTCACGCCTGAACTCAATGCATTGTGTTCAATTACGTTCGGTTTATCA
ATGATTCTCGTTATTATCTCTCATCGCTTGTCAGGTAAATTGATATGA

Upstream 100 bases:

>100_bases
TGAGCGATTGGCCTCAGGGAGCCGCCACCAGTGTGCTATTAACTTCCGTTCTGCTTATTTTAATGTTCATTTTTCGGCGA
CAGAACAATGAGGTCATTCG

Downstream 100 bases:

>100_bases
AAATTTTTTCATTGCTGCTCGCTCTTCTTACATTTAAGGCGTTCTCCAATCCAGTAGTCAATGTCTATGCCTGGGGAGGT
GAAATCCCTAAAAAAATAAT

Product: hypothetical protein

Products: Phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MKTMTQRLFLSLVYAFLYIPIAILVLYSVNDAKFSLQWHGFSLRWYKELFHDRGLWSAVFNSITLGLTSSLIATTMGLLA
SINLFLFRTRHRQILYTLLLLLIIIPDIVLGVALLIFFNITQVPLGFLSLLVAHITFSIPFVILTINSRINTLNPNVYFG
ALDLGASRYFALTRVLLPLLWPAVLSAFLLSFTLSFDDVIISYFVAGPDFTILPLTIYSLVRAGVTPELNALCSITFGLS
MILVIISHRLSGKLI

Sequences:

>Translated_255_residues
MKTMTQRLFLSLVYAFLYIPIAILVLYSVNDAKFSLQWHGFSLRWYKELFHDRGLWSAVFNSITLGLTSSLIATTMGLLA
SINLFLFRTRHRQILYTLLLLLIIIPDIVLGVALLIFFNITQVPLGFLSLLVAHITFSIPFVILTINSRINTLNPNVYFG
ALDLGASRYFALTRVLLPLLWPAVLSAFLLSFTLSFDDVIISYFVAGPDFTILPLTIYSLVRAGVTPELNALCSITFGLS
MILVIISHRLSGKLI
>Mature_255_residues
MKTMTQRLFLSLVYAFLYIPIAILVLYSVNDAKFSLQWHGFSLRWYKELFHDRGLWSAVFNSITLGLTSSLIATTMGLLA
SINLFLFRTRHRQILYTLLLLLIIIPDIVLGVALLIFFNITQVPLGFLSLLVAHITFSIPFVILTINSRINTLNPNVYFG
ALDLGASRYFALTRVLLPLLWPAVLSAFLLSFTLSFDDVIISYFVAGPDFTILPLTIYSLVRAGVTPELNALCSITFGLS
MILVIISHRLSGKLI

Specific function: Required for the activity of the bacterial periplasmic transport system of putrescine and spermidine [H]

COG id: COG1177

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component II

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787368, Length=240, Percent_Identity=42.9166666666667, Blast_Score=193, Evalue=1e-50,
Organism=Escherichia coli, GI1787081, Length=234, Percent_Identity=36.7521367521368, Blast_Score=143, Evalue=1e-35,
Organism=Escherichia coli, GI1787714, Length=202, Percent_Identity=34.6534653465347, Blast_Score=82, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 28624; Mature: 28624

Theoretical pI: Translated: 9.92; Mature: 9.92

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTMTQRLFLSLVYAFLYIPIAILVLYSVNDAKFSLQWHGFSLRWYKELFHDRGLWSAVF
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHCCCHHHHHH
NSITLGLTSSLIATTMGLLASINLFLFRTRHRQILYTLLLLLIIIPDIVLGVALLIFFNI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TQVPLGFLSLLVAHITFSIPFVILTINSRINTLNPNVYFGALDLGASRYFALTRVLLPLL
HHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCEEEEEEHHCHHHHHHHHHHHHHHH
WPAVLSAFLLSFTLSFDDVIISYFVAGPDFTILPLTIYSLVRAGVTPELNALCSITFGLS
HHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
MILVIISHRLSGKLI
HHHHHHHHHHCCCCC
>Mature Secondary Structure
MKTMTQRLFLSLVYAFLYIPIAILVLYSVNDAKFSLQWHGFSLRWYKELFHDRGLWSAVF
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHCCCHHHHHH
NSITLGLTSSLIATTMGLLASINLFLFRTRHRQILYTLLLLLIIIPDIVLGVALLIFFNI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TQVPLGFLSLLVAHITFSIPFVILTINSRINTLNPNVYFGALDLGASRYFALTRVLLPLL
HHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCEEEEEEHHCHHHHHHHHHHHHHHH
WPAVLSAFLLSFTLSFDDVIISYFVAGPDFTILPLTIYSLVRAGVTPELNALCSITFGLS
HHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
MILVIISHRLSGKLI
HHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]