Click here to switch to the map view.

The map label for this gene is yciR [C]

Identifier: 54294055

GI number: 54294055

Start: 1241351

End: 1243693

Strand: Reverse

Name: yciR [C]

Synonym: lpl1118

Alternate gene names: 54294055

Gene position: 1243693-1241351 (Counterclockwise)

Preceding gene: 54294056

Following gene: 54294054

Centisome position: 37.17

GC content: 35.55

Gene sequence:

>2343_bases
ATGGCTATTGGGGTATTGGTGATTAATAATGAAGGGCAAATTCTTTATGCAAATGATTATGTAGTACAAATGTTTGGTGT
ACCCCATACAGAACTTGTTGGCACCAATTTTTTATATCCGATGGCAGCAAATGAAACACAGGAAGTTGAAATTTTAAAAC
CCAGTAATGAAGTTTTAACAGTACATATGACAGTCAGGAAAAGTATCTGGGAAAATCGCCAGGTATGGATTATTTCTCTC
TTTGATATTACAGAGCTCAAACTAAAAGAAAAACTTTTAAAAATTTCAAGCAAAGGCATCAGTTCAGCGTTTGAAGGTAT
TATCATCACCGATCCGGAAGGCACCATTATTGAAACCAATAACGCATTTATGAAAATGACAGGATATACAGAGCAGGAAG
TCATAGGCCAAAAACCTGCTTTCTTGCATTCAAGGAAACAAAACGAGAAATTTTACAAGGAGCTATGGAATATACTCATA
GCGAAAGGTCAGTGGAGCGGTGAGCTTTGGGCAAAAAAGAAAAATAAAAGGTTATTTCCTGCCTTTTTGGCCATCTCGGC
CGTTAAAAATTCTGATGGTGATATCATCAACTACATTGGCTATTATCATGATCTCACGTTAATAAAAAAACAAGAACAAC
AAATCGAGAATTTCAAATATTATGATTATTTAACAGGATTACCGAATAAATTTTTACTCACTCAAAGACTTCAGACGCTT
ATCAGCAGATTGTCCGAAGTAAATAAGGAGCTCATCGTTTTTAATATTAGAGTATTTGACTCCAATAGCAAAAGCTCTCT
GTTAGATTTACCCCCCAATACTCGCGATAAAATCATATTGGAAGCAGTTAACCGGATTGATCGAACAACGCCAAAAAAAA
TGTTTTTCTCACGCATCGGTTTAAGTGAGTTTATTGTTATTTATTTTATCAAAAACAAAATTGAAGTGATGGCTTCGATT
GCACAAAGAATGATAGAAAAACTCTCTTATCCTTATTACGTTCATCACCAAACTATTATTTTGCAAACGATCATTGGATT
AACCGCCTATTATAAAAACAGCTCATTCAGCGCCGAAGATTTGATACAACAATCTGAAATTGCCCGCCACAAAGCGCATA
TCAGGGGGGTTAATATTTTTGAATTTTTTGACCCTCAGGTTGAAGAACGAATTATAGAATTTAATAAGCGCGTTGAATCT
GTCTCTAAAGCAATGCAGTTAAATGAACTGAAAGTTTATTACCAACCTATTGTAGAATTAAATACGGCTAAAGTGGTGGG
TTTGGAAGCGCTGCTTCGTTGGCAGCATCCAGAGAAAGGTTTATTGCTTCCCAAACAATTTTTATCCGATCTCAATAATC
ATCCTCTTTCTCTACAGATTGGTGATTGGGTGCTTCATCAGGTATTACATCAAGCTGAAGAATTGCTCGCTTGCAATATA
AAAATCCCCATCAATGTTAATGTTAGTGCTTATCAACTGCAACATCCCAACTTTGTCAAAAAACTGTTTGACACATTGGC
ACGATACCCTAATGTTCCTCATCGCCTGCTTATGCTTGAAATCCTTGAAACAGAAGCTATTGAAGATTTGACTCTAGTAT
CCCAGATAATAGCCGAGTGCAAAGCTAAAGGAATCAACTTTTCCTTGGATGACTTTGGAACAGGTTATGCTTCTTTAACT
TTCCTAAAAGAATTGAGTACCTCGGAAGTGAAAATCGATCGAAGTTTTATCATTAACATCTTTGATAACCCTAAAGATCT
CGCTATTTTGAAAATAATTATAGAGTCTTGCAAAGTGATTGGCCGCACCCTGATTGCTGAAGGAGTTGAAACAGTAGCAC
ATGGGAAACTATTAGAATTACTTGGTTGCCATCTAATCCAGGGATACGCCATTGCCAAACCTATCCCTCCTGCAAAATTA
ATTACATGGATAAAAAACTGGCATCTTGGCCCAGAATGGAGAGAAACAAGGTTTTCACAAGCGGAACTATCTAATCTGGT
AAAAATCTCCATAAAACACTATCTACATTACCAATCAATCAGGCTATATTTAGACAATCACCAATTTCCAAAACCCCAAT
TATGCCTGCAAGCATGCCCAATTGAGCATTGGCTTCTTGAGAACCAGCAAATCTTTCATAAAGGCAAACAATTTAAAACA
ATCTATGAGTTGCATCATAAACAACACCAACTTGGGGATAAAATAATTCAATTAATAGAAGCTGGACAAAAAGAAGAAGC
TGACAAATTACTAATAAATCTTGATGAATTAAGAGATAATTTCTTAAAAGTGTTTATTAATTTCATTTTTAATTCAAATA
ATGCCCAAAGTATTGGAGAATGA

Upstream 100 bases:

>100_bases
AGCAAAAAGTTATTTCTGCTTTGGAAATGGACTAGGTGATATCGTGATATCAAACGAGCATATCAACACACAAAACTTTT
GGTACCAACTCGTTGAAAAA

Downstream 100 bases:

>100_bases
ATTTCGATAAAAAATATTTTTTACTCAATAGCTTATATATTAAACTACTGGTAAATAAAAAATGACAAGGAGACAGTCAT
GAGCAATTTAAAATTCTTGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 780; Mature: 779

Protein sequence:

>780_residues
MAIGVLVINNEGQILYANDYVVQMFGVPHTELVGTNFLYPMAANETQEVEILKPSNEVLTVHMTVRKSIWENRQVWIISL
FDITELKLKEKLLKISSKGISSAFEGIIITDPEGTIIETNNAFMKMTGYTEQEVIGQKPAFLHSRKQNEKFYKELWNILI
AKGQWSGELWAKKKNKRLFPAFLAISAVKNSDGDIINYIGYYHDLTLIKKQEQQIENFKYYDYLTGLPNKFLLTQRLQTL
ISRLSEVNKELIVFNIRVFDSNSKSSLLDLPPNTRDKIILEAVNRIDRTTPKKMFFSRIGLSEFIVIYFIKNKIEVMASI
AQRMIEKLSYPYYVHHQTIILQTIIGLTAYYKNSSFSAEDLIQQSEIARHKAHIRGVNIFEFFDPQVEERIIEFNKRVES
VSKAMQLNELKVYYQPIVELNTAKVVGLEALLRWQHPEKGLLLPKQFLSDLNNHPLSLQIGDWVLHQVLHQAEELLACNI
KIPINVNVSAYQLQHPNFVKKLFDTLARYPNVPHRLLMLEILETEAIEDLTLVSQIIAECKAKGINFSLDDFGTGYASLT
FLKELSTSEVKIDRSFIINIFDNPKDLAILKIIIESCKVIGRTLIAEGVETVAHGKLLELLGCHLIQGYAIAKPIPPAKL
ITWIKNWHLGPEWRETRFSQAELSNLVKISIKHYLHYQSIRLYLDNHQFPKPQLCLQACPIEHWLLENQQIFHKGKQFKT
IYELHHKQHQLGDKIIQLIEAGQKEEADKLLINLDELRDNFLKVFINFIFNSNNAQSIGE

Sequences:

>Translated_780_residues
MAIGVLVINNEGQILYANDYVVQMFGVPHTELVGTNFLYPMAANETQEVEILKPSNEVLTVHMTVRKSIWENRQVWIISL
FDITELKLKEKLLKISSKGISSAFEGIIITDPEGTIIETNNAFMKMTGYTEQEVIGQKPAFLHSRKQNEKFYKELWNILI
AKGQWSGELWAKKKNKRLFPAFLAISAVKNSDGDIINYIGYYHDLTLIKKQEQQIENFKYYDYLTGLPNKFLLTQRLQTL
ISRLSEVNKELIVFNIRVFDSNSKSSLLDLPPNTRDKIILEAVNRIDRTTPKKMFFSRIGLSEFIVIYFIKNKIEVMASI
AQRMIEKLSYPYYVHHQTIILQTIIGLTAYYKNSSFSAEDLIQQSEIARHKAHIRGVNIFEFFDPQVEERIIEFNKRVES
VSKAMQLNELKVYYQPIVELNTAKVVGLEALLRWQHPEKGLLLPKQFLSDLNNHPLSLQIGDWVLHQVLHQAEELLACNI
KIPINVNVSAYQLQHPNFVKKLFDTLARYPNVPHRLLMLEILETEAIEDLTLVSQIIAECKAKGINFSLDDFGTGYASLT
FLKELSTSEVKIDRSFIINIFDNPKDLAILKIIIESCKVIGRTLIAEGVETVAHGKLLELLGCHLIQGYAIAKPIPPAKL
ITWIKNWHLGPEWRETRFSQAELSNLVKISIKHYLHYQSIRLYLDNHQFPKPQLCLQACPIEHWLLENQQIFHKGKQFKT
IYELHHKQHQLGDKIIQLIEAGQKEEADKLLINLDELRDNFLKVFINFIFNSNNAQSIGE
>Mature_779_residues
AIGVLVINNEGQILYANDYVVQMFGVPHTELVGTNFLYPMAANETQEVEILKPSNEVLTVHMTVRKSIWENRQVWIISLF
DITELKLKEKLLKISSKGISSAFEGIIITDPEGTIIETNNAFMKMTGYTEQEVIGQKPAFLHSRKQNEKFYKELWNILIA
KGQWSGELWAKKKNKRLFPAFLAISAVKNSDGDIINYIGYYHDLTLIKKQEQQIENFKYYDYLTGLPNKFLLTQRLQTLI
SRLSEVNKELIVFNIRVFDSNSKSSLLDLPPNTRDKIILEAVNRIDRTTPKKMFFSRIGLSEFIVIYFIKNKIEVMASIA
QRMIEKLSYPYYVHHQTIILQTIIGLTAYYKNSSFSAEDLIQQSEIARHKAHIRGVNIFEFFDPQVEERIIEFNKRVESV
SKAMQLNELKVYYQPIVELNTAKVVGLEALLRWQHPEKGLLLPKQFLSDLNNHPLSLQIGDWVLHQVLHQAEELLACNIK
IPINVNVSAYQLQHPNFVKKLFDTLARYPNVPHRLLMLEILETEAIEDLTLVSQIIAECKAKGINFSLDDFGTGYASLTF
LKELSTSEVKIDRSFIINIFDNPKDLAILKIIIESCKVIGRTLIAEGVETVAHGKLLELLGCHLIQGYAIAKPIPPAKLI
TWIKNWHLGPEWRETRFSQAELSNLVKISIKHYLHYQSIRLYLDNHQFPKPQLCLQACPIEHWLLENQQIFHKGKQFKTI
YELHHKQHQLGDKIIQLIEAGQKEEADKLLINLDELRDNFLKVFINFIFNSNNAQSIGE

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=570, Percent_Identity=26.140350877193, Blast_Score=175, Evalue=9e-45,
Organism=Escherichia coli, GI87081921, Length=454, Percent_Identity=28.4140969162996, Blast_Score=173, Evalue=4e-44,
Organism=Escherichia coli, GI226510982, Length=428, Percent_Identity=27.5700934579439, Blast_Score=158, Evalue=1e-39,
Organism=Escherichia coli, GI1790496, Length=245, Percent_Identity=29.7959183673469, Blast_Score=121, Evalue=1e-28,
Organism=Escherichia coli, GI1788502, Length=257, Percent_Identity=27.6264591439689, Blast_Score=117, Evalue=2e-27,
Organism=Escherichia coli, GI1786507, Length=250, Percent_Identity=30.4, Blast_Score=117, Evalue=3e-27,
Organism=Escherichia coli, GI1787055, Length=259, Percent_Identity=30.8880308880309, Blast_Score=114, Evalue=2e-26,
Organism=Escherichia coli, GI87081980, Length=244, Percent_Identity=28.2786885245902, Blast_Score=111, Evalue=2e-25,
Organism=Escherichia coli, GI87081743, Length=257, Percent_Identity=29.5719844357977, Blast_Score=108, Evalue=2e-24,
Organism=Escherichia coli, GI87081845, Length=253, Percent_Identity=30.0395256916996, Blast_Score=100, Evalue=4e-22,
Organism=Escherichia coli, GI87082096, Length=262, Percent_Identity=29.0076335877863, Blast_Score=87, Evalue=4e-18,
Organism=Escherichia coli, GI1788849, Length=258, Percent_Identity=27.906976744186, Blast_Score=84, Evalue=5e-17,
Organism=Escherichia coli, GI1787410, Length=245, Percent_Identity=22.8571428571429, Blast_Score=71, Evalue=3e-13,
Organism=Escherichia coli, GI1788381, Length=572, Percent_Identity=20.8041958041958, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 90067; Mature: 89936

Theoretical pI: Translated: 7.97; Mature: 7.97

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50883 EAL ; PS50887 GGDEF ; PS00284 SERPIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIGVLVINNEGQILYANDYVVQMFGVPHTELVGTNFLYPMAANETQEVEILKPSNEVLT
CEEEEEEECCCCCEEEECCEEEEEECCCCHHHCCCCEEEEECCCCCCEEEEECCCCCEEE
VHMTVRKSIWENRQVWIISLFDITELKLKEKLLKISSKGISSAFEGIIITDPEGTIIETN
EEEEHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHHCCCCHHHHCCEEEECCCCCEEECC
NAFMKMTGYTEQEVIGQKPAFLHSRKQNEKFYKELWNILIAKGQWSGELWAKKKNKRLFP
CCEEEECCCCHHHHHCCCCHHHHCCCCCHHHHHHHHHHEEECCCCCCHHHHCCCCCCHHH
AFLAISAVKNSDGDIINYIGYYHDLTLIKKQEQQIENFKYYDYLTGLPNKFLLTQRLQTL
HHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHH
ISRLSEVNKELIVFNIRVFDSNSKSSLLDLPPNTRDKIILEAVNRIDRTTPKKMFFSRIG
HHHHHHCCCEEEEEEEEEECCCCCCCEEECCCCCHHHHHHHHHHHHHCCCHHHHHHHHCC
LSEFIVIYFIKNKIEVMASIAQRMIEKLSYPYYVHHQTIILQTIIGLTAYYKNSSFSAED
HHHHEEEEHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCHHH
LIQQSEIARHKAHIRGVNIFEFFDPQVEERIIEFNKRVESVSKAMQLNELKVYYQPIVEL
HHHHHHHHHHHHHHCCCEEHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHEE
NTAKVVGLEALLRWQHPEKGLLLPKQFLSDLNNHPLSLQIGDWVLHQVLHQAEELLACNI
CCHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHEEEE
KIPINVNVSAYQLQHPNFVKKLFDTLARYPNVPHRLLMLEILETEAIEDLTLVSQIIAEC
EEEEEECCEEEEECCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
KAKGINFSLDDFGTGYASLTFLKELSTSEVKIDRSFIINIFDNPKDLAILKIIIESCKVI
HHCCCCEEHHCCCCCHHHHHHHHHCCCCCEEECCEEEEEECCCCCHHHHHHHHHHHHHHH
GRTLIAEGVETVAHGKLLELLGCHLIQGYAIAKPIPPAKLITWIKNWHLGPEWRETRFSQ
HHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCHHHHHHHHHHCCCCCCHHHHCCCH
AELSNLVKISIKHYLHYQSIRLYLDNHQFPKPQLCLQACPIEHWLLENQQIFHKGKQFKT
HHHHHHHHHHHHHHHHEEHEEEEECCCCCCCHHHHHHHCCHHHHHHCCHHHHHCCCHHHH
IYELHHKQHQLGDKIIQLIEAGQKEEADKLLINLDELRDNFLKVFINFIFNSNNAQSIGE
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHEEEHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
AIGVLVINNEGQILYANDYVVQMFGVPHTELVGTNFLYPMAANETQEVEILKPSNEVLT
EEEEEEECCCCCEEEECCEEEEEECCCCHHHCCCCEEEEECCCCCCEEEEECCCCCEEE
VHMTVRKSIWENRQVWIISLFDITELKLKEKLLKISSKGISSAFEGIIITDPEGTIIETN
EEEEHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHHCCCCHHHHCCEEEECCCCCEEECC
NAFMKMTGYTEQEVIGQKPAFLHSRKQNEKFYKELWNILIAKGQWSGELWAKKKNKRLFP
CCEEEECCCCHHHHHCCCCHHHHCCCCCHHHHHHHHHHEEECCCCCCHHHHCCCCCCHHH
AFLAISAVKNSDGDIINYIGYYHDLTLIKKQEQQIENFKYYDYLTGLPNKFLLTQRLQTL
HHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHH
ISRLSEVNKELIVFNIRVFDSNSKSSLLDLPPNTRDKIILEAVNRIDRTTPKKMFFSRIG
HHHHHHCCCEEEEEEEEEECCCCCCCEEECCCCCHHHHHHHHHHHHHCCCHHHHHHHHCC
LSEFIVIYFIKNKIEVMASIAQRMIEKLSYPYYVHHQTIILQTIIGLTAYYKNSSFSAED
HHHHEEEEHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCHHH
LIQQSEIARHKAHIRGVNIFEFFDPQVEERIIEFNKRVESVSKAMQLNELKVYYQPIVEL
HHHHHHHHHHHHHHCCCEEHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHEE
NTAKVVGLEALLRWQHPEKGLLLPKQFLSDLNNHPLSLQIGDWVLHQVLHQAEELLACNI
CCHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHEEEE
KIPINVNVSAYQLQHPNFVKKLFDTLARYPNVPHRLLMLEILETEAIEDLTLVSQIIAEC
EEEEEECCEEEEECCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
KAKGINFSLDDFGTGYASLTFLKELSTSEVKIDRSFIINIFDNPKDLAILKIIIESCKVI
HHCCCCEEHHCCCCCHHHHHHHHHCCCCCEEECCEEEEEECCCCCHHHHHHHHHHHHHHH
GRTLIAEGVETVAHGKLLELLGCHLIQGYAIAKPIPPAKLITWIKNWHLGPEWRETRFSQ
HHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCHHHHHHHHHHCCCCCCHHHHCCCH
AELSNLVKISIKHYLHYQSIRLYLDNHQFPKPQLCLQACPIEHWLLENQQIFHKGKQFKT
HHHHHHHHHHHHHHHHEEHEEEEECCCCCCCHHHHHHHCCHHHHHHCCHHHHHCCCHHHH
IYELHHKQHQLGDKIIQLIEAGQKEEADKLLINLDELRDNFLKVFINFIFNSNNAQSIGE
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHEEEHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]