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The map label for this gene is intF [H]

Identifier: 54294024

GI number: 54294024

Start: 1212983

End: 1214224

Strand: Reverse

Name: intF [H]

Synonym: lpl1085

Alternate gene names: 54294024

Gene position: 1214224-1212983 (Counterclockwise)

Preceding gene: 54294025

Following gene: 54294019

Centisome position: 36.29

GC content: 38.57

Gene sequence:

>1242_bases
ATGAAAATAAACAAAACAAACGTAGAAAACCTCCCTCTTCCTCAAGCAACAGAAGTAGGTAAAACGACACAAAAAAGATA
TTACGATGACAACCTGAAAGGTTTCGGCATACGTGTGACTTCTGGAGGAGCAAAAGCCTTTTTCGTTGAAAAATTCATAA
ATAAGAAACGTTGTCGCATTACTTTAGGGCATTACCCGGAATTGACTGCTGAAATGGCGAAAAACAAAGCCCTGCATCTT
TTAGGGCAAATCGCCATGGGCATTGATCCAGTTGCTGAGAAGAAGGCAGCTGAGGTTCGAGATATAACTTTGAATCAAGT
CTTTAAAGACTACCTAAAAACCAGAAAGAACTTAAAACCTAAAACTATAGATAATTACAAACACATATTAGATAAAGCCT
TCACAAGCTGGAAGAGTAAACCAATGTTATCGATCACCAGAGATCGCGTAGCTAAATATCACGAAAAGCTGGGCAATGAA
CATGGAGAAGCCTATGCTAATTTAGCCATGCGAATCCTAAGAGCCTTATTCAATTTTGCAGCCGGCCAGTATGAAGACAA
TAGTGGTCACTCTCTTTTCATCGATAACCCAGTAAAACGCCTCTCACAAACACGTGCCTGGTATCGCATCGAAAGACGAA
AAACCTATATAAAATCCCATGAGCTAGCTGCTTGGTACGCTGGGCTACAACAAATCCAAAATGATACATTACGCGACTAT
CTGTTATTAATCTTATTAACAGGTTTACGCCGACAAGAAGCAGCGACTTTGAAATGGTCTGATCTCGACTTAAAAGCAAA
ATCATTCACTATCAATAAAACCAAAAACAATGAATCCCATACCCTCCCCCTTTCTGACTTTCTTTATGATTTGATGATTG
CCAGACAAGAAAAAGCAATTAATGGCTATATTTTCCCGGGACCAGGTGCAGCAGGTCATATTATTGAACCACGTAAGACT
ATGGCACACGTGATAAAAAATTCAGGTGTTCATTTTACTGTACATGATTTGAGGCGTACTTTTATCACCATTGCAGAAAG
TCTGGATATCCCTGCTTATGCATTGAAGCGTTTAATGAACCATAAGATGAGTAATGATGTGACTGCTGGGTATATTATTG
TTGATGTTGAGCGGCTACGAAAGCCTATGCAGCTTATTACTAACTATATTCTAAAGTGTATGGAAGTAATTGATTCCAAT
GAAGTTATTCCTATGCAATCTACTAACAAAGAGCAGATATAA

Upstream 100 bases:

>100_bases
TGATGTTACAGCACTATTACGTTATAAGTTCTATTAATTGATTTTAAATAATTGTGCGACACAAGTGCGACACATTCAAA
AACCAGTGTAAAAGTTAATT

Downstream 100 bases:

>100_bases
ATAAGAATCTAGATTTGGCACACACTGTGTTCCATATCTGAATCCAATTTGGCACTCACTGCGTTCCAAATTCAAAAACC
AACAATTAACGAAGAAATTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 413; Mature: 413

Protein sequence:

>413_residues
MKINKTNVENLPLPQATEVGKTTQKRYYDDNLKGFGIRVTSGGAKAFFVEKFINKKRCRITLGHYPELTAEMAKNKALHL
LGQIAMGIDPVAEKKAAEVRDITLNQVFKDYLKTRKNLKPKTIDNYKHILDKAFTSWKSKPMLSITRDRVAKYHEKLGNE
HGEAYANLAMRILRALFNFAAGQYEDNSGHSLFIDNPVKRLSQTRAWYRIERRKTYIKSHELAAWYAGLQQIQNDTLRDY
LLLILLTGLRRQEAATLKWSDLDLKAKSFTINKTKNNESHTLPLSDFLYDLMIARQEKAINGYIFPGPGAAGHIIEPRKT
MAHVIKNSGVHFTVHDLRRTFITIAESLDIPAYALKRLMNHKMSNDVTAGYIIVDVERLRKPMQLITNYILKCMEVIDSN
EVIPMQSTNKEQI

Sequences:

>Translated_413_residues
MKINKTNVENLPLPQATEVGKTTQKRYYDDNLKGFGIRVTSGGAKAFFVEKFINKKRCRITLGHYPELTAEMAKNKALHL
LGQIAMGIDPVAEKKAAEVRDITLNQVFKDYLKTRKNLKPKTIDNYKHILDKAFTSWKSKPMLSITRDRVAKYHEKLGNE
HGEAYANLAMRILRALFNFAAGQYEDNSGHSLFIDNPVKRLSQTRAWYRIERRKTYIKSHELAAWYAGLQQIQNDTLRDY
LLLILLTGLRRQEAATLKWSDLDLKAKSFTINKTKNNESHTLPLSDFLYDLMIARQEKAINGYIFPGPGAAGHIIEPRKT
MAHVIKNSGVHFTVHDLRRTFITIAESLDIPAYALKRLMNHKMSNDVTAGYIIVDVERLRKPMQLITNYILKCMEVIDSN
EVIPMQSTNKEQI
>Mature_413_residues
MKINKTNVENLPLPQATEVGKTTQKRYYDDNLKGFGIRVTSGGAKAFFVEKFINKKRCRITLGHYPELTAEMAKNKALHL
LGQIAMGIDPVAEKKAAEVRDITLNQVFKDYLKTRKNLKPKTIDNYKHILDKAFTSWKSKPMLSITRDRVAKYHEKLGNE
HGEAYANLAMRILRALFNFAAGQYEDNSGHSLFIDNPVKRLSQTRAWYRIERRKTYIKSHELAAWYAGLQQIQNDTLRDY
LLLILLTGLRRQEAATLKWSDLDLKAKSFTINKTKNNESHTLPLSDFLYDLMIARQEKAINGYIFPGPGAAGHIIEPRKT
MAHVIKNSGVHFTVHDLRRTFITIAESLDIPAYALKRLMNHKMSNDVTAGYIIVDVERLRKPMQLITNYILKCMEVIDSN
EVIPMQSTNKEQI

Specific function: Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI2367104, Length=418, Percent_Identity=26.7942583732057, Blast_Score=117, Evalue=1e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 47397; Mature: 47397

Theoretical pI: Translated: 10.26; Mature: 10.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKINKTNVENLPLPQATEVGKTTQKRYYDDNLKGFGIRVTSGGAKAFFVEKFINKKRCRI
CCCCCCCCCCCCCCCCHHHCCHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEE
TLGHYPELTAEMAKNKALHLLGQIAMGIDPVAEKKAAEVRDITLNQVFKDYLKTRKNLKP
EECCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
KTIDNYKHILDKAFTSWKSKPMLSITRDRVAKYHEKLGNEHGEAYANLAMRILRALFNFA
CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
AGQYEDNSGHSLFIDNPVKRLSQTRAWYRIERRKTYIKSHELAAWYAGLQQIQNDTLRDY
CCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLLILLTGLRRQEAATLKWSDLDLKAKSFTINKTKNNESHTLPLSDFLYDLMIARQEKAI
HHHHHHHCCCHHHCCEEEECCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHC
NGYIFPGPGAAGHIIEPRKTMAHVIKNSGVHFTVHDLRRTFITIAESLDIPAYALKRLMN
CCEEECCCCCCCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHCCCCHHHHHHHHH
HKMSNDVTAGYIIVDVERLRKPMQLITNYILKCMEVIDSNEVIPMQSTNKEQI
HHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCC
>Mature Secondary Structure
MKINKTNVENLPLPQATEVGKTTQKRYYDDNLKGFGIRVTSGGAKAFFVEKFINKKRCRI
CCCCCCCCCCCCCCCCHHHCCHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEE
TLGHYPELTAEMAKNKALHLLGQIAMGIDPVAEKKAAEVRDITLNQVFKDYLKTRKNLKP
EECCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
KTIDNYKHILDKAFTSWKSKPMLSITRDRVAKYHEKLGNEHGEAYANLAMRILRALFNFA
CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
AGQYEDNSGHSLFIDNPVKRLSQTRAWYRIERRKTYIKSHELAAWYAGLQQIQNDTLRDY
CCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLLILLTGLRRQEAATLKWSDLDLKAKSFTINKTKNNESHTLPLSDFLYDLMIARQEKAI
HHHHHHHCCCHHHCCEEEECCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHC
NGYIFPGPGAAGHIIEPRKTMAHVIKNSGVHFTVHDLRRTFITIAESLDIPAYALKRLMN
CCEEECCCCCCCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHCCCCHHHHHHHHH
HKMSNDVTAGYIIVDVERLRKPMQLITNYILKCMEVIDSNEVIPMQSTNKEQI
HHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]