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The map label for this gene is capB [H]

Identifier: 54293997

GI number: 54293997

Start: 1186452

End: 1186661

Strand: Reverse

Name: capB [H]

Synonym: lpl1057

Alternate gene names: 54293997

Gene position: 1186661-1186452 (Counterclockwise)

Preceding gene: 54293999

Following gene: 54293996

Centisome position: 35.47

GC content: 37.14

Gene sequence:

>210_bases
ATGACTAACAAAATTCGTGGTAAAGTCAAATGGTTTAATAAAGACAAGGGTTTTGGTTTTATTGAAAGTAGTGGCAAAGA
CTACTTTGTCCACTTTAGTTCAATTCAAAGTGACGGCTTTAAAACACTTCCCGATGGGGCAGCCGTTCTTTTTAAAATGG
GAAAAGGACAGAAAGGACCTCAGGCTGAGGAAGTAGAAGTTATCAAATAA

Upstream 100 bases:

>100_bases
ATTAAACCACTAAAAGCTTTCTGGTTAGCAAGTATTGACAAAAAGAACAGCGTCGCATGACACTATATAACCCACTTGAT
TATAAGGAAATAAACAAAAA

Downstream 100 bases:

>100_bases
ATGACCACCATTAGGTCTAGGTAAGACCGTTCCGATGACAATAACACTTATTTTTACTGCATGTAACCATCAAGGAGGAA
GGAAGTGAACCAACGAGTTG

Product: hypothetical protein

Products: NA

Alternate protein names: C8.0; Cold acclimation protein B [H]

Number of amino acids: Translated: 69; Mature: 68

Protein sequence:

>69_residues
MTNKIRGKVKWFNKDKGFGFIESSGKDYFVHFSSIQSDGFKTLPDGAAVLFKMGKGQKGPQAEEVEVIK

Sequences:

>Translated_69_residues
MTNKIRGKVKWFNKDKGFGFIESSGKDYFVHFSSIQSDGFKTLPDGAAVLFKMGKGQKGPQAEEVEVIK
>Mature_68_residues
TNKIRGKVKWFNKDKGFGFIESSGKDYFVHFSSIQSDGFKTLPDGAAVLFKMGKGQKGPQAEEVEVIK

Specific function: Affects cell viability at low temperatures [H]

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=65, Percent_Identity=58.4615384615385, Blast_Score=76, Evalue=4e-16,
Organism=Escherichia coli, GI1788126, Length=67, Percent_Identity=58.2089552238806, Blast_Score=76, Evalue=5e-16,
Organism=Escherichia coli, GI1787839, Length=69, Percent_Identity=53.6231884057971, Blast_Score=74, Evalue=1e-15,
Organism=Escherichia coli, GI2367114, Length=70, Percent_Identity=51.4285714285714, Blast_Score=74, Evalue=2e-15,
Organism=Escherichia coli, GI1789979, Length=70, Percent_Identity=52.8571428571429, Blast_Score=72, Evalue=5e-15,
Organism=Escherichia coli, GI1787834, Length=67, Percent_Identity=55.2238805970149, Blast_Score=70, Evalue=3e-14,
Organism=Escherichia coli, GI1787107, Length=62, Percent_Identity=50, Blast_Score=63, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7686; Mature: 7555

Theoretical pI: Translated: 10.25; Mature: 10.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNKIRGKVKWFNKDKGFGFIESSGKDYFVHFSSIQSDGFKTLPDGAAVLFKMGKGQKGP
CCCCCCCEEEEEECCCCCEEEECCCCEEEEEEECCCCCCCEECCCCEEEEEECCCCCCCC
QAEEVEVIK
CCCCEEEEC
>Mature Secondary Structure 
TNKIRGKVKWFNKDKGFGFIESSGKDYFVHFSSIQSDGFKTLPDGAAVLFKMGKGQKGP
CCCCCCEEEEEECCCCCEEEECCCCEEEEEEECCCCCCCEECCCCEEEEEECCCCCCCC
QAEEVEVIK
CCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9393697 [H]