Click here to switch to the map view.

The map label for this gene is 54293689

Identifier: 54293689

GI number: 54293689

Start: 843390

End: 843827

Strand: Direct

Name: 54293689

Synonym: lpl0742

Alternate gene names: NA

Gene position: 843390-843827 (Clockwise)

Preceding gene: 54293688

Following gene: 54293690

Centisome position: 25.21

GC content: 41.78

Gene sequence:

>438_bases
ATGGATTATATAACCTCTTTTACTCCTTATCTAAGTGCCATTGGTGGATTACTGATTGGCTTAAGTGCTGTCCTTTTTTT
ATGGTTAAACGGCCGTATAGCTGGCATCAGTGGAATGATACACGGACTCTGTCCACCTGAAAAACCATTCCCAGTCTGGT
GTATTGCCTTTTTACTTGGTTTGGCAGCTGCAGGATTGATCTATTTCATAAGCCCTGTTATCCAGTTTCCATTAAGAACA
CATTATCCGGTTTTCCTGTTACTAATTGGTGGATTTTTGGTGGGTTTTGGAACCCGAATGGGCCAAGGTTGTACTTCGGG
ACACGGGGTATGTGGACTGGCCAGATTTTCCAAGCGCTCCTTTATAGCGACACTGCTTTTTATCTTATCTGCAATGATTA
CTGTGTATCTGATAAGACATGTGGGAGGATTATATTAA

Upstream 100 bases:

>100_bases
TATTGTTTTAAAACATCAATATAATTTGAGGGACACTTTAAAAAATTAAAGTGTCTCAATTCAGGTGTTATTCATTGTAA
ATGAAACGGAAATATAAATA

Downstream 100 bases:

>100_bases
TGTATAACATCATGTCATTTCTATGTGGTTTGTTATTTGGAGCCGGGTTGACTATTTCAAATATGATCAATCCTAACAAG
GTATTAAATTTTCTTGATAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 145; Mature: 145

Protein sequence:

>145_residues
MDYITSFTPYLSAIGGLLIGLSAVLFLWLNGRIAGISGMIHGLCPPEKPFPVWCIAFLLGLAAAGLIYFISPVIQFPLRT
HYPVFLLLIGGFLVGFGTRMGQGCTSGHGVCGLARFSKRSFIATLLFILSAMITVYLIRHVGGLY

Sequences:

>Translated_145_residues
MDYITSFTPYLSAIGGLLIGLSAVLFLWLNGRIAGISGMIHGLCPPEKPFPVWCIAFLLGLAAAGLIYFISPVIQFPLRT
HYPVFLLLIGGFLVGFGTRMGQGCTSGHGVCGLARFSKRSFIATLLFILSAMITVYLIRHVGGLY
>Mature_145_residues
MDYITSFTPYLSAIGGLLIGLSAVLFLWLNGRIAGISGMIHGLCPPEKPFPVWCIAFLLGLAAAGLIYFISPVIQFPLRT
HYPVFLLLIGGFLVGFGTRMGQGCTSGHGVCGLARFSKRSFIATLLFILSAMITVYLIRHVGGLY

Specific function: Unknown

COG id: COG2391

COG function: function code R; Predicted transporter component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0394 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007272 [H]

Pfam domain/function: PF04143 DUF395 [H]

EC number: NA

Molecular weight: Translated: 15643; Mature: 15643

Theoretical pI: Translated: 9.55; Mature: 9.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDYITSFTPYLSAIGGLLIGLSAVLFLWLNGRIAGISGMIHGLCPPEKPFPVWCIAFLLG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHH
LAAAGLIYFISPVIQFPLRTHYPVFLLLIGGFLVGFGTRMGQGCTSGHGVCGLARFSKRS
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
FIATLLFILSAMITVYLIRHVGGLY
HHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MDYITSFTPYLSAIGGLLIGLSAVLFLWLNGRIAGISGMIHGLCPPEKPFPVWCIAFLLG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHH
LAAAGLIYFISPVIQFPLRTHYPVFLLLIGGFLVGFGTRMGQGCTSGHGVCGLARFSKRS
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
FIATLLFILSAMITVYLIRHVGGLY
HHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12533478 [H]