Click here to switch to the map view.

The map label for this gene is ybhS [H]

Identifier: 54293644

GI number: 54293644

Start: 782921

End: 784042

Strand: Direct

Name: ybhS [H]

Synonym: lpl0697

Alternate gene names: 54293644

Gene position: 782921-784042 (Clockwise)

Preceding gene: 54293643

Following gene: 54293645

Centisome position: 23.4

GC content: 39.39

Gene sequence:

>1122_bases
TTGAATATTCGCTATCTAAAGGCTTTGGTCATTAAGGAAACTCTGCAAATTATCCGTGATCCCAGTACTATATTAATTGC
CTTTGTATTGCCTTTAATTTTGCTTTTTATTTTCGGTTATGGTGTTAATCTGGATACTGATCAAGTCAAGTTTGGTCTGG
CTTTAGAGAGTTATGATTCGTCGACTGTCAGTCTTTCTCAATCTTTTAGCAGTTCCCGATTTTTGGATGTATCTATTTCA
ACAAACAGACAAGCGTTTCGTTATGGCTTGGTTAATGGAACAATTCGTGGTTTTATTGATATTCCTCAACGTTTCACTGC
TGATAGCCTGAGTGGAAATCCCCAGCCGGCTCTGCAAACCATAGTTGATGGTTCTTATCCGCAAGTTGCCGGTTTTGCAG
AAAATTATGCGCTTGGGGCTTTGCAAACCTGGATTAACTCCCAAGCTTATGAGCATGGGCAAATGACACTTAAGTCCGGA
ATTAACCTTGAACCCAGATACTGGTACAACCAGGAGCTAAAAAGCAGAAATTTTCTTATTCCTGGCTCAATAGTTATTGT
CATGACTTTGATTGGAACATTACTCACCTCGCTGGTGATCGCTCGTGAGTGGGAAAGAGGTACGATGGAGGCGATGATGG
CAACGCCAATTTCTATTGTTGACATCATCTTGGGAAAATTAATACCCTATTTTGTGTTAGGGATGGGTTCCATGTTTTTA
TGCACTATTATTGCAACATGGTATTATGGAGTACCTTTCCAAGGTACTCTTTTGGCGCTGACATTAGTTTCAGCTGTCTT
TCTGGTTGCTGCCTTAGGGCAGGGATTATTAATATCTACTCTTGCAAGAGACCAGTTTGTGGCTTCGCAATTGGCTTTAA
TGTCTGCGTTTTTGCCTTCATTTATTCTTTCCGGGTTTATTTTTGAAATCAATTCGATGCCAAAGTGGATACAACTACTC
ACTCATTTGTTTTCTGCACGTTATTTTGTGACAAGTCTGCAAACCTTGTTTTTAACGGGTAACATTTGGTCTCTTTTGAT
TCGTTGCCTTTTTGCGATTGCACTGATTGGATTTGCATTTTTTTTTATTACTGCGCATAAAACCAGAAAAAGGCTTGATT
AA

Upstream 100 bases:

>100_bases
ACTCCACATTACCCAATCCCACTTTAGAAGACGCGTTTATCGAGTTAATCCGATTGGATGAGTTGCGTGAGCCGGTACAT
TAACACAGGGAGAATAGTGG

Downstream 100 bases:

>100_bases
TGGCAAAATTATCTCCAACAACAAGAATTTTTGCTCTTGTCATTAAAGAGATATTGACTTTATTCAAAGATCCCAAGGGA
CGAATTGTATTGATAGCTCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 373; Mature: 373

Protein sequence:

>373_residues
MNIRYLKALVIKETLQIIRDPSTILIAFVLPLILLFIFGYGVNLDTDQVKFGLALESYDSSTVSLSQSFSSSRFLDVSIS
TNRQAFRYGLVNGTIRGFIDIPQRFTADSLSGNPQPALQTIVDGSYPQVAGFAENYALGALQTWINSQAYEHGQMTLKSG
INLEPRYWYNQELKSRNFLIPGSIVIVMTLIGTLLTSLVIAREWERGTMEAMMATPISIVDIILGKLIPYFVLGMGSMFL
CTIIATWYYGVPFQGTLLALTLVSAVFLVAALGQGLLISTLARDQFVASQLALMSAFLPSFILSGFIFEINSMPKWIQLL
THLFSARYFVTSLQTLFLTGNIWSLLIRCLFAIALIGFAFFFITAHKTRKRLD

Sequences:

>Translated_373_residues
MNIRYLKALVIKETLQIIRDPSTILIAFVLPLILLFIFGYGVNLDTDQVKFGLALESYDSSTVSLSQSFSSSRFLDVSIS
TNRQAFRYGLVNGTIRGFIDIPQRFTADSLSGNPQPALQTIVDGSYPQVAGFAENYALGALQTWINSQAYEHGQMTLKSG
INLEPRYWYNQELKSRNFLIPGSIVIVMTLIGTLLTSLVIAREWERGTMEAMMATPISIVDIILGKLIPYFVLGMGSMFL
CTIIATWYYGVPFQGTLLALTLVSAVFLVAALGQGLLISTLARDQFVASQLALMSAFLPSFILSGFIFEINSMPKWIQLL
THLFSARYFVTSLQTLFLTGNIWSLLIRCLFAIALIGFAFFFITAHKTRKRLD
>Mature_373_residues
MNIRYLKALVIKETLQIIRDPSTILIAFVLPLILLFIFGYGVNLDTDQVKFGLALESYDSSTVSLSQSFSSSRFLDVSIS
TNRQAFRYGLVNGTIRGFIDIPQRFTADSLSGNPQPALQTIVDGSYPQVAGFAENYALGALQTWINSQAYEHGQMTLKSG
INLEPRYWYNQELKSRNFLIPGSIVIVMTLIGTLLTSLVIAREWERGTMEAMMATPISIVDIILGKLIPYFVLGMGSMFL
CTIIATWYYGVPFQGTLLALTLVSAVFLVAALGQGLLISTLARDQFVASQLALMSAFLPSFILSGFIFEINSMPKWIQLL
THLFSARYFVTSLQTLFLTGNIWSLLIRCLFAIALIGFAFFFITAHKTRKRLD

Specific function: Unknown

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

Organism=Escherichia coli, GI1787011, Length=370, Percent_Identity=46.2162162162162, Blast_Score=343, Evalue=8e-96,
Organism=Escherichia coli, GI48994943, Length=361, Percent_Identity=28.808864265928, Blast_Score=149, Evalue=3e-37,
Organism=Escherichia coli, GI1787010, Length=359, Percent_Identity=27.2980501392758, Blast_Score=126, Evalue=3e-30,
Organism=Escherichia coli, GI226510979, Length=326, Percent_Identity=26.6871165644172, Blast_Score=70, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 41567; Mature: 41567

Theoretical pI: Translated: 9.17; Mature: 9.17

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIRYLKALVIKETLQIIRDPSTILIAFVLPLILLFIFGYGVNLDTDQVKFGLALESYDS
CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHEEEEEECCCC
STVSLSQSFSSSRFLDVSISTNRQAFRYGLVNGTIRGFIDIPQRFTADSLSGNPQPALQT
CHHHHHHCCCCCCEEEEEECCCCHHHHHHHHCCCHHHHHHCCHHHCCCCCCCCCCHHHHH
IVDGSYPQVAGFAENYALGALQTWINSQAYEHGQMTLKSGINLEPRYWYNQELKSRNFLI
HHCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCHHHCCCCCCC
PGSIVIVMTLIGTLLTSLVIAREWERGTMEAMMATPISIVDIILGKLIPYFVLGMGSMFL
CHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
CTIIATWYYGVPFQGTLLALTLVSAVFLVAALGQGLLISTLARDQFVASQLALMSAFLPS
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
FILSGFIFEINSMPKWIQLLTHLFSARYFVTSLQTLFLTGNIWSLLIRCLFAIALIGFAF
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
FFITAHKTRKRLD
HHHHHHHHHHCCC
>Mature Secondary Structure
MNIRYLKALVIKETLQIIRDPSTILIAFVLPLILLFIFGYGVNLDTDQVKFGLALESYDS
CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHEEEEEECCCC
STVSLSQSFSSSRFLDVSISTNRQAFRYGLVNGTIRGFIDIPQRFTADSLSGNPQPALQT
CHHHHHHCCCCCCEEEEEECCCCHHHHHHHHCCCHHHHHHCCHHHCCCCCCCCCCHHHHH
IVDGSYPQVAGFAENYALGALQTWINSQAYEHGQMTLKSGINLEPRYWYNQELKSRNFLI
HHCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCHHHCCCCCCC
PGSIVIVMTLIGTLLTSLVIAREWERGTMEAMMATPISIVDIILGKLIPYFVLGMGSMFL
CHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
CTIIATWYYGVPFQGTLLALTLVSAVFLVAALGQGLLISTLARDQFVASQLALMSAFLPS
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
FILSGFIFEINSMPKWIQLLTHLFSARYFVTSLQTLFLTGNIWSLLIRCLFAIALIGFAF
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
FFITAHKTRKRLD
HHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]