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The map label for this gene is ycjD [C]

Identifier: 54293630

GI number: 54293630

Start: 763740

End: 764090

Strand: Direct

Name: ycjD [C]

Synonym: lpl0683

Alternate gene names: 54293630

Gene position: 763740-764090 (Clockwise)

Preceding gene: 54293629

Following gene: 54293631

Centisome position: 22.83

GC content: 35.33

Gene sequence:

>351_bases
GTGGTTCCAGCTGATGCTAAATTATTGAAACAAGCAAAATCTCTCCGGAAAAGGAGCACTGATGCTGAAAATTGTTTATG
GTACTATCTAAGAGCACATCAATTAAAAGGATACAAATTTAAAAGACAAGTTCCTATTGGGAATTATATTGTCGATTTTG
TTTGTATTCAGAGAAAACTCATTGTTGAACTGGATGGTGGACAACATCTTTTAAATAAAGAGTATGATAAAGACCGGAGC
GCCTATTTTAGCACATTAAGTTATAAGGTTTTGCGGTTTTGGAGTGATGATGTGTTATTGAGAACTGGAGACGTACTTGA
GAGTATTGTCAGATGCCTGGAAGAATCATAA

Upstream 100 bases:

>100_bases
ATGTGAGTTGATTGATACTGATATTTAAACAAAAATTCCCTCTCCCGCGAAAGAAGTTGTATAAAAAAATTTGGGTATGA
TTCGCGGGAGAGGGGAATAA

Downstream 100 bases:

>100_bases
GGTTGATAAGATTAACATTTAACTGTTCAGTAATGATAGCGGAGTAGCCTAAGTAATGAAAGTAATTAGTTTTAACGCCA
ATGGCATACGCTCTTCTGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 116; Mature: 116

Protein sequence:

>116_residues
MVPADAKLLKQAKSLRKRSTDAENCLWYYLRAHQLKGYKFKRQVPIGNYIVDFVCIQRKLIVELDGGQHLLNKEYDKDRS
AYFSTLSYKVLRFWSDDVLLRTGDVLESIVRCLEES

Sequences:

>Translated_116_residues
MVPADAKLLKQAKSLRKRSTDAENCLWYYLRAHQLKGYKFKRQVPIGNYIVDFVCIQRKLIVELDGGQHLLNKEYDKDRS
AYFSTLSYKVLRFWSDDVLLRTGDVLESIVRCLEES
>Mature_116_residues
MVPADAKLLKQAKSLRKRSTDAENCLWYYLRAHQLKGYKFKRQVPIGNYIVDFVCIQRKLIVELDGGQHLLNKEYDKDRS
AYFSTLSYKVLRFWSDDVLLRTGDVLESIVRCLEES

Specific function: Unknown

COG id: COG2852

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ycjD and H.influenzae HI_0925 [H]

Homologues:

Organism=Escherichia coli, GI1787546, Length=107, Percent_Identity=41.1214953271028, Blast_Score=96, Evalue=7e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007569
- InterPro:   IPR011335 [H]

Pfam domain/function: PF04480 DUF559 [H]

EC number: NA

Molecular weight: Translated: 13620; Mature: 13620

Theoretical pI: Translated: 9.37; Mature: 9.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVPADAKLLKQAKSLRKRSTDAENCLWYYLRAHQLKGYKFKRQVPIGNYIVDFVCIQRKL
CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHH
IVELDGGQHLLNKEYDKDRSAYFSTLSYKVLRFWSDDVLLRTGDVLESIVRCLEES
EEEECCCCHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHCCC
>Mature Secondary Structure
MVPADAKLLKQAKSLRKRSTDAENCLWYYLRAHQLKGYKFKRQVPIGNYIVDFVCIQRKL
CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHH
IVELDGGQHLLNKEYDKDRSAYFSTLSYKVLRFWSDDVLLRTGDVLESIVRCLEES
EEEECCCCHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]