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The map label for this gene is deoB [H]

Identifier: 54293623

GI number: 54293623

Start: 732120

End: 733343

Strand: Direct

Name: deoB [H]

Synonym: lpl0676

Alternate gene names: 54293623

Gene position: 732120-733343 (Clockwise)

Preceding gene: 54293622

Following gene: 54293624

Centisome position: 21.88

GC content: 43.87

Gene sequence:

>1224_bases
ATGACCGGACGAATTTGTATATTAGTAATGGATTCCTTTGGCATCGGAGCCAGCCTTGATGCAGCTCGGTATGGAGATGC
GGGTGCTAACACCTTGGTTCACATTTATGAAGCGTGTAAACGAGGTGAGTGCGATATAGAAGGGGCTCGCAAAGGTCCTT
TAATGCTTCCAAATCTTGCGGGCAAGGGGCTTTACCATGCTGCTATGGCCAGTTCCGGGTTACCCTTTATCGATTTGGCT
ACTTTAGCTATTCCTTCTGGATATTATGGATATGCAGTGGAACAAAGCTTGGGCAAAGATACCCCCAGTGGTCATTGGGA
AATGGCTGGGGTGCCCGTGACTTTCGAGTGGGGATATTTCCCTGATAAACCTTACTGTTTCCCTGAAGAATTAATTTCAG
AATTCATTAAGCAGTGTAATTTGCCAGGAGTTTTGGGAGAAAAGCATGCTTCGGGAACCATCATTATGGACGAGTTGGGT
GAGGAGCATATTCGTACCGGTAAGCCGATCGTGTACACTTCTGCCGATAGCGTATTTCAAATTGCCGCACATGAAGAGGC
ATTTGGTTTACAACGTCTCTATGATATCTGCAAAATTGCTCGAAATTTAGTAGATAAATATCAAATTGGTCGAGTGATTG
CTCGTCCTTTTACAGGTAAGCCGGGCTCATTTAAGAGAACAGGTAATAGAAAAGATTACGCTACACCTCCTCCGGAAAAA
ACATTGCTTGATTTTCTAAAGGAAGATGGTCGGGAAGTGATTGCTATAGGTAAGATTGCAGACATCTATGCTCATCAAGG
GGTTACGCAAGAAATCAAAGCTGATGGCAATATGGCTTTGTTTGATGCCACTTTATCCGCAATGAAAACAGCCCCGCAAG
GTAGCTTGGTATTTACCAATTTTGTTGATTTTGATTCTTCTTATGGGCATAGGCGTGATATAGCTGGTTATGCGCATGCG
CTAGAGCAATTCGATGCGCGTCTGCCAGAGTTGGAGGTTCTCTTACAACCGAATGACATGGTTTTTATCGCAGCAGATCA
TGGATGTGATCCTACATTCCCTGGATCTGATCATACCCGCGAGCATATTCCAGTATTAGTGTTTGGCCCTCAGGTAAATA
GCAAATTTATTGGACGGAGAGATTGTTTCGCAGATATTGGTCAGAGTATTGCGGAGCATTTGCAATTATCCTCGCCACTC
ACTCATGGTGTTTCTTTTTTATAA

Upstream 100 bases:

>100_bases
ATCAGCATGCAGCAATCATTTTACCCATAGGACTATTGATCGCATTACTTTTATTGTTTGGATTAAAAGAAACTCGTTGC
CAACAAGTTGAGCATACAGT

Downstream 100 bases:

>100_bases
TTTTATATCCACTCCTTACGGTCGTGGCTCGGTTTGAACGATAATCCGGGCCACGACCGTAAGGAGTGGATATGGCGATT
AGTATTTTCAGATATTAAGA

Product: phosphopentomutase

Products: NA

Alternate protein names: Phosphodeoxyribomutase [H]

Number of amino acids: Translated: 407; Mature: 406

Protein sequence:

>407_residues
MTGRICILVMDSFGIGASLDAARYGDAGANTLVHIYEACKRGECDIEGARKGPLMLPNLAGKGLYHAAMASSGLPFIDLA
TLAIPSGYYGYAVEQSLGKDTPSGHWEMAGVPVTFEWGYFPDKPYCFPEELISEFIKQCNLPGVLGEKHASGTIIMDELG
EEHIRTGKPIVYTSADSVFQIAAHEEAFGLQRLYDICKIARNLVDKYQIGRVIARPFTGKPGSFKRTGNRKDYATPPPEK
TLLDFLKEDGREVIAIGKIADIYAHQGVTQEIKADGNMALFDATLSAMKTAPQGSLVFTNFVDFDSSYGHRRDIAGYAHA
LEQFDARLPELEVLLQPNDMVFIAADHGCDPTFPGSDHTREHIPVLVFGPQVNSKFIGRRDCFADIGQSIAEHLQLSSPL
THGVSFL

Sequences:

>Translated_407_residues
MTGRICILVMDSFGIGASLDAARYGDAGANTLVHIYEACKRGECDIEGARKGPLMLPNLAGKGLYHAAMASSGLPFIDLA
TLAIPSGYYGYAVEQSLGKDTPSGHWEMAGVPVTFEWGYFPDKPYCFPEELISEFIKQCNLPGVLGEKHASGTIIMDELG
EEHIRTGKPIVYTSADSVFQIAAHEEAFGLQRLYDICKIARNLVDKYQIGRVIARPFTGKPGSFKRTGNRKDYATPPPEK
TLLDFLKEDGREVIAIGKIADIYAHQGVTQEIKADGNMALFDATLSAMKTAPQGSLVFTNFVDFDSSYGHRRDIAGYAHA
LEQFDARLPELEVLLQPNDMVFIAADHGCDPTFPGSDHTREHIPVLVFGPQVNSKFIGRRDCFADIGQSIAEHLQLSSPL
THGVSFL
>Mature_406_residues
TGRICILVMDSFGIGASLDAARYGDAGANTLVHIYEACKRGECDIEGARKGPLMLPNLAGKGLYHAAMASSGLPFIDLAT
LAIPSGYYGYAVEQSLGKDTPSGHWEMAGVPVTFEWGYFPDKPYCFPEELISEFIKQCNLPGVLGEKHASGTIIMDELGE
EHIRTGKPIVYTSADSVFQIAAHEEAFGLQRLYDICKIARNLVDKYQIGRVIARPFTGKPGSFKRTGNRKDYATPPPEKT
LLDFLKEDGREVIAIGKIADIYAHQGVTQEIKADGNMALFDATLSAMKTAPQGSLVFTNFVDFDSSYGHRRDIAGYAHAL
EQFDARLPELEVLLQPNDMVFIAADHGCDPTFPGSDHTREHIPVLVFGPQVNSKFIGRRDCFADIGQSIAEHLQLSSPLT
HGVSFL

Specific function: Phosphotransfer between the C1 and C5 carbon atoms of pentose [H]

COG id: COG1015

COG function: function code G; Phosphopentomutase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphopentomutase family [H]

Homologues:

Organism=Escherichia coli, GI1790843, Length=398, Percent_Identity=58.2914572864322, Blast_Score=464, Evalue=1e-132,
Organism=Escherichia coli, GI1789781, Length=451, Percent_Identity=28.6031042128603, Blast_Score=110, Evalue=2e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017849
- InterPro:   IPR017850
- InterPro:   IPR010045
- InterPro:   IPR006124 [H]

Pfam domain/function: PF01676 Metalloenzyme [H]

EC number: =5.4.2.7 [H]

Molecular weight: Translated: 44481; Mature: 44350

Theoretical pI: Translated: 5.55; Mature: 5.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGRICILVMDSFGIGASLDAARYGDAGANTLVHIYEACKRGECDIEGARKGPLMLPNLA
CCCCEEEEEEECCCCCCCCCHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEECCCCC
GKGLYHAAMASSGLPFIDLATLAIPSGYYGYAVEQSLGKDTPSGHWEMAGVPVTFEWGYF
CCCHHHHHHHCCCCCCEEHHHHHCCCCCCCHHHHHHHCCCCCCCCEEECCCEEEEECCCC
PDKPYCFPEELISEFIKQCNLPGVLGEKHASGTIIMDELGEEHIRTGKPIVYTSADSVFQ
CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEHHHCCHHHHHCCCCEEEECCCCEEE
IAAHEEAFGLQRLYDICKIARNLVDKYQIGRVIARPFTGKPGSFKRTGNRKDYATPPPEK
EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHH
TLLDFLKEDGREVIAIGKIADIYAHQGVTQEIKADGNMALFDATLSAMKTAPQGSLVFTN
HHHHHHHHCCCEEEEECHHHHHHHHCCCCHHHHCCCCEEEHHHHHHHHHCCCCCCEEEEE
FVDFDSSYGHRRDIAGYAHALEQFDARLPELEVLLQPNDMVFIAADHGCDPTFPGSDHTR
EECCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCH
EHIPVLVFGPQVNSKFIGRRDCFADIGQSIAEHLQLSSPLTHGVSFL
HCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHCCCCC
>Mature Secondary Structure 
TGRICILVMDSFGIGASLDAARYGDAGANTLVHIYEACKRGECDIEGARKGPLMLPNLA
CCCEEEEEEECCCCCCCCCHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEECCCCC
GKGLYHAAMASSGLPFIDLATLAIPSGYYGYAVEQSLGKDTPSGHWEMAGVPVTFEWGYF
CCCHHHHHHHCCCCCCEEHHHHHCCCCCCCHHHHHHHCCCCCCCCEEECCCEEEEECCCC
PDKPYCFPEELISEFIKQCNLPGVLGEKHASGTIIMDELGEEHIRTGKPIVYTSADSVFQ
CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEHHHCCHHHHHCCCCEEEECCCCEEE
IAAHEEAFGLQRLYDICKIARNLVDKYQIGRVIARPFTGKPGSFKRTGNRKDYATPPPEK
EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHH
TLLDFLKEDGREVIAIGKIADIYAHQGVTQEIKADGNMALFDATLSAMKTAPQGSLVFTN
HHHHHHHHCCCEEEEECHHHHHHHHCCCCHHHHCCCCEEEHHHHHHHHHCCCCCCEEEEE
FVDFDSSYGHRRDIAGYAHALEQFDARLPELEVLLQPNDMVFIAADHGCDPTFPGSDHTR
EECCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCH
EHIPVLVFGPQVNSKFIGRRDCFADIGQSIAEHLQLSSPLTHGVSFL
HCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA