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The map label for this gene is ybdK [C]

Identifier: 54293599

GI number: 54293599

Start: 703126

End: 704247

Strand: Direct

Name: ybdK [C]

Synonym: lpl0652

Alternate gene names: 54293599

Gene position: 703126-704247 (Clockwise)

Preceding gene: 54293598

Following gene: 54293601

Centisome position: 21.02

GC content: 38.77

Gene sequence:

>1122_bases
ATGCCTTTACAACCATTCAAAACATCTAATTTACTGACTATGGGGGTTGAGCTGGAATTACAATTAATCAGCTTAAGTAA
TTTTGACTTGACTGCAGCCAGTCCTGATATATTGGAGCTCTTGGGACGATCGTCTTTTCCCGGCAGTTTTACGCCAGAAA
TCACAGAAAGTATGCTAGAAATAGCGACAGATGTGCATGAAGAATATGAACAATTACTGAAACAACTGTTTCATATACGC
GATACCCTGGTGGCAGTCGGAGACCGATTAAATATTGGTATTTGTGGTGGGGGAACTCATCCATTTCAAATGTGGTCTGA
TCAGCGAATTTTTAATAAAACCAGATTTATAGAGGTCTCTGAATTATATGGCTATCTAACCAAGCAATTTACTATTTTTG
GGCAACATATACATATTGGTTGTGAGGACGGTAATCAAGCGCTTTTTTTACTTCATTCTTTAAATCGTTATATCCCTCAT
TTTATTGCATTGTCTGCTTCATCCCCCTTCGTTCAGAGTAAGGATACCTTGTATAACTCTGCTCGATTGAATTCGGTGTT
TGCCTTCCCATTAAGTGGAAGGGCTCCCTTTGTATTAAACTGGGATGAATTCTCGCTCGGTTATTTCGAAAAAATGGAGC
ATACCGGCATCGTGAAAAGTATGAAGGATTTTTATTGGGATTTAAGACCTAAACCTGAGTTTGGGACAATTGAAATGCGG
GTGTGTGATAGTCCCCTTACGGTTGAGCGAGCAGCCGCTTTAGCTTGTTATATGCAAGCGCTTTGCAGTTATTTATTGGA
AAATAAAGAACCTCTGCCTCACGAAGATGATTATCTTGTCTACAATTACAATCGTTTTCAAGCATGCCGATTCGGTCTGG
ATGGCACTCTGGTGCACCCCAAAACATATGAGCAAATTTTGCTTCGAGAAGATATTTTAACAACACTTCGCCGATTAAAG
CCTTATGCTAATCAGCTAAATAGTACTATGGCTTTGGAGCATATTTATGAAATAACTCACAAAGGGAGTGATGCCAGCTT
TTTAAGAGAAAAATATGCAGAACATAGAACTCTTGAAAGTGTGGTCAATGAATCATTAAAGCAATTCAGGAGTTCTAAAT
AA

Upstream 100 bases:

>100_bases
CTGGCTATGGTTGCCCTGACTTTGGAAATATTGGGCCCAATAATGGTTCAACGCGCTTTAATTAAAGCGAACGAAATCTC
TGCAATGAAGGAGTTTTGAA

Downstream 100 bases:

>100_bases
TCGGCTGGGATTATACAAAATCAAATAAGCTATTTTGGACTACAAAATAGCTTTTTGTTTTGCCTTAACTCTCTTCATAC
CCCATGACAACCAATATACA

Product: carboxylate-amine ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 373; Mature: 372

Protein sequence:

>373_residues
MPLQPFKTSNLLTMGVELELQLISLSNFDLTAASPDILELLGRSSFPGSFTPEITESMLEIATDVHEEYEQLLKQLFHIR
DTLVAVGDRLNIGICGGGTHPFQMWSDQRIFNKTRFIEVSELYGYLTKQFTIFGQHIHIGCEDGNQALFLLHSLNRYIPH
FIALSASSPFVQSKDTLYNSARLNSVFAFPLSGRAPFVLNWDEFSLGYFEKMEHTGIVKSMKDFYWDLRPKPEFGTIEMR
VCDSPLTVERAAALACYMQALCSYLLENKEPLPHEDDYLVYNYNRFQACRFGLDGTLVHPKTYEQILLREDILTTLRRLK
PYANQLNSTMALEHIYEITHKGSDASFLREKYAEHRTLESVVNESLKQFRSSK

Sequences:

>Translated_373_residues
MPLQPFKTSNLLTMGVELELQLISLSNFDLTAASPDILELLGRSSFPGSFTPEITESMLEIATDVHEEYEQLLKQLFHIR
DTLVAVGDRLNIGICGGGTHPFQMWSDQRIFNKTRFIEVSELYGYLTKQFTIFGQHIHIGCEDGNQALFLLHSLNRYIPH
FIALSASSPFVQSKDTLYNSARLNSVFAFPLSGRAPFVLNWDEFSLGYFEKMEHTGIVKSMKDFYWDLRPKPEFGTIEMR
VCDSPLTVERAAALACYMQALCSYLLENKEPLPHEDDYLVYNYNRFQACRFGLDGTLVHPKTYEQILLREDILTTLRRLK
PYANQLNSTMALEHIYEITHKGSDASFLREKYAEHRTLESVVNESLKQFRSSK
>Mature_372_residues
PLQPFKTSNLLTMGVELELQLISLSNFDLTAASPDILELLGRSSFPGSFTPEITESMLEIATDVHEEYEQLLKQLFHIRD
TLVAVGDRLNIGICGGGTHPFQMWSDQRIFNKTRFIEVSELYGYLTKQFTIFGQHIHIGCEDGNQALFLLHSLNRYIPHF
IALSASSPFVQSKDTLYNSARLNSVFAFPLSGRAPFVLNWDEFSLGYFEKMEHTGIVKSMKDFYWDLRPKPEFGTIEMRV
CDSPLTVERAAALACYMQALCSYLLENKEPLPHEDDYLVYNYNRFQACRFGLDGTLVHPKTYEQILLREDILTTLRRLKP
YANQLNSTMALEHIYEITHKGSDASFLREKYAEHRTLESVVNESLKQFRSSK

Specific function: ATP-dependent carboxylate-amine ligase [H]

COG id: COG2170

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carboxylate-amine ligase family [H]

Homologues:

Organism=Escherichia coli, GI1786795, Length=366, Percent_Identity=39.8907103825137, Blast_Score=302, Evalue=3e-83,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011793
- InterPro:   IPR006336 [H]

Pfam domain/function: PF04107 GCS2 [H]

EC number: NA

Molecular weight: Translated: 42856; Mature: 42725

Theoretical pI: Translated: 5.90; Mature: 5.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLQPFKTSNLLTMGVELELQLISLSNFDLTAASPDILELLGRSSFPGSFTPEITESMLE
CCCCCCCCCCEEEEEEEEEEEEEEECCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHH
IATDVHEEYEQLLKQLFHIRDTLVAVGDRLNIGICGGGTHPFQMWSDQRIFNKTRFIEVS
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHCCCCHHHHHHHEEEHH
ELYGYLTKQFTIFGQHIHIGCEDGNQALFLLHSLNRYIPHFIALSASSPFVQSKDTLYNS
HHHHHHHHHHEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHEEECCCCCCCCCHHHHHHH
ARLNSVFAFPLSGRAPFVLNWDEFSLGYFEKMEHTGIVKSMKDFYWDLRPKPEFGTIEMR
HHCCEEEEEECCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEE
VCDSPLTVERAAALACYMQALCSYLLENKEPLPHEDDYLVYNYNRFQACRFGLDGTLVHP
ECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCHHHHHHCCCCCEEECC
KTYEQILLREDILTTLRRLKPYANQLNSTMALEHIYEITHKGSDASFLREKYAEHRTLES
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
VVNESLKQFRSSK
HHHHHHHHHHCCC
>Mature Secondary Structure 
PLQPFKTSNLLTMGVELELQLISLSNFDLTAASPDILELLGRSSFPGSFTPEITESMLE
CCCCCCCCCEEEEEEEEEEEEEEECCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHH
IATDVHEEYEQLLKQLFHIRDTLVAVGDRLNIGICGGGTHPFQMWSDQRIFNKTRFIEVS
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHCCCCHHHHHHHEEEHH
ELYGYLTKQFTIFGQHIHIGCEDGNQALFLLHSLNRYIPHFIALSASSPFVQSKDTLYNS
HHHHHHHHHHEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHEEECCCCCCCCCHHHHHHH
ARLNSVFAFPLSGRAPFVLNWDEFSLGYFEKMEHTGIVKSMKDFYWDLRPKPEFGTIEMR
HHCCEEEEEECCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEE
VCDSPLTVERAAALACYMQALCSYLLENKEPLPHEDDYLVYNYNRFQACRFGLDGTLVHP
ECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCHHHHHHCCCCCEEECC
KTYEQILLREDILTTLRRLKPYANQLNSTMALEHIYEITHKGSDASFLREKYAEHRTLES
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
VVNESLKQFRSSK
HHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA