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The map label for this gene is ycjD [H]

Identifier: 54293512

GI number: 54293512

Start: 608697

End: 609032

Strand: Direct

Name: ycjD [H]

Synonym: lpl0562

Alternate gene names: 54293512

Gene position: 608697-609032 (Clockwise)

Preceding gene: 54293506

Following gene: 54293517

Centisome position: 18.19

GC content: 41.67

Gene sequence:

>336_bases
ATGGACAAATCTACGCTAAGACAACGAGCTCGCAATTTGCGGCAAAATAGTACGGATGCCGAGAGACATCTTTGGTATCA
TCTTAGGGCAAATAGACTGGGATTTAAATTCAGGAGACAAGTGCTCATAGGTTCATACATCGTCGATTTTGTCTGTATTG
AAAAGCGGTTGATTATCGAGCTTGATGGCGGTCAACACATGGACAATCAAATTTACGATACAAAGCGCAGCGATTGGTTA
ATGACACATGGGTTTAAGGTGTTGCGTTTTTGGAATAACGACGTTTTTCAGCAAACGCCATCTGTTCTCGAAGTCATCAC
ATCTGCGCTATTTTAA

Upstream 100 bases:

>100_bases
GCTTGGATTTTCAACTTCACCAGGATCTTCCCCCTCTCCCGCGCTAGGAGCTTTGATAGTAGGATGGTGCCTTTCGCGGG
AGAGGGTTGGGGAGAGGGAA

Downstream 100 bases:

>100_bases
AGCCAATATTATACTTACAAACATGACACCAGTGAGGTACATCCTGGCTGTTTTATCATATCTTGTAGCAATCCTTCTAA
AGCGCTTAATCTTCTGAAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 111; Mature: 111

Protein sequence:

>111_residues
MDKSTLRQRARNLRQNSTDAERHLWYHLRANRLGFKFRRQVLIGSYIVDFVCIEKRLIIELDGGQHMDNQIYDTKRSDWL
MTHGFKVLRFWNNDVFQQTPSVLEVITSALF

Sequences:

>Translated_111_residues
MDKSTLRQRARNLRQNSTDAERHLWYHLRANRLGFKFRRQVLIGSYIVDFVCIEKRLIIELDGGQHMDNQIYDTKRSDWL
MTHGFKVLRFWNNDVFQQTPSVLEVITSALF
>Mature_111_residues
MDKSTLRQRARNLRQNSTDAERHLWYHLRANRLGFKFRRQVLIGSYIVDFVCIEKRLIIELDGGQHMDNQIYDTKRSDWL
MTHGFKVLRFWNNDVFQQTPSVLEVITSALF

Specific function: Unknown

COG id: COG2852

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_1162 and to HI_0925 [H]

Homologues:

Organism=Escherichia coli, GI1787546, Length=106, Percent_Identity=49.0566037735849, Blast_Score=106, Evalue=4e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004603
- InterPro:   IPR007569
- InterPro:   IPR011335 [H]

Pfam domain/function: PF04480 DUF559 [H]

EC number: NA

Molecular weight: Translated: 13315; Mature: 13315

Theoretical pI: Translated: 10.28; Mature: 10.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKSTLRQRARNLRQNSTDAERHLWYHLRANRLGFKFRRQVLIGSYIVDFVCIEKRLIIE
CCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEE
LDGGQHMDNQIYDTKRSDWLMTHGFKVLRFWNNDVFQQTPSVLEVITSALF
ECCCCCCCCHHHCCCCCCEEHHCCHHHHHHHCCHHHHCCHHHHHHHHHHCC
>Mature Secondary Structure
MDKSTLRQRARNLRQNSTDAERHLWYHLRANRLGFKFRRQVLIGSYIVDFVCIEKRLIIE
CCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEE
LDGGQHMDNQIYDTKRSDWLMTHGFKVLRFWNNDVFQQTPSVLEVITSALF
ECCCCCCCCHHHCCCCCCEEHHCCHHHHHHHCCHHHHCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 8075395; 1364817 [H]