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The map label for this gene is lphA [H]

Identifier: 54293440

GI number: 54293440

Start: 531848

End: 532417

Strand: Direct

Name: lphA [H]

Synonym: lpl0489

Alternate gene names: 54293440

Gene position: 531848-532417 (Clockwise)

Preceding gene: 54293439

Following gene: 54293441

Centisome position: 15.9

GC content: 38.6

Gene sequence:

>570_bases
GTGAGATCACTTCGTACTAACTACATCTATGTATTGTTTAAAACAACTGGATTATTATTCTTATTGTTGCTGAGTGGTTG
CAATCGTTCTGGTTATATCCCTGAGAATGAAGTGCCCAAATTACCATGCCGTGTTGATGGAGCATGCGATGCAACAATAA
TAAAAATGATGACTGATTTAAATAAAAAAGGGATTAAAGTTGCATCAGTAGGCCAAAATTATTTAATTAGTATTCCTGCT
AGCGCTCTGTTTGCTGATCAATCTCCTCGGTTAAATTGGGCTTCCTATAGCCTTTTAAATGAGATCGCGGCGTTTCTTAA
ACAATTTCGTAAAATTGCTATAACGGTAACCAGTTACAGTAGTAAATATGTGTCAGTAAAAAGGGAACGGGCATTGACAT
TGGCGAGATCAAGAGTAGTAAGTGAATACCTATGGTCTCAGGGGGTTGATAGCAGAATCATCTTTACACAAGGGTTAGGT
AGTGATAAACCTATAACTAGTTATACTCTTGGTGGTGATAGATCGCCTAATGCCAGGGTGGAGATCACATTTAGGCGGGC
TGTGGCATAA

Upstream 100 bases:

>100_bases
GTAACGTAATGATTTGTATGTTTTTATTATCAAATGGAATGTTTGAGATAGTTAGACATAGATAACACAATTAGTCTATT
TTCAAAGATGGGGATAACAG

Downstream 100 bases:

>100_bases
TTGAGGTAAAAATGAGTCGAGAAACATGGGCTTTAATAAAACGAAATAAGAATTTTAATGTCCATATTTACAGACGTGGC
TTAACACTGCTAATTCTTTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 189; Mature: 189

Protein sequence:

>189_residues
MRSLRTNYIYVLFKTTGLLFLLLLSGCNRSGYIPENEVPKLPCRVDGACDATIIKMMTDLNKKGIKVASVGQNYLISIPA
SALFADQSPRLNWASYSLLNEIAAFLKQFRKIAITVTSYSSKYVSVKRERALTLARSRVVSEYLWSQGVDSRIIFTQGLG
SDKPITSYTLGGDRSPNARVEITFRRAVA

Sequences:

>Translated_189_residues
MRSLRTNYIYVLFKTTGLLFLLLLSGCNRSGYIPENEVPKLPCRVDGACDATIIKMMTDLNKKGIKVASVGQNYLISIPA
SALFADQSPRLNWASYSLLNEIAAFLKQFRKIAITVTSYSSKYVSVKRERALTLARSRVVSEYLWSQGVDSRIIFTQGLG
SDKPITSYTLGGDRSPNARVEITFRRAVA
>Mature_189_residues
MRSLRTNYIYVLFKTTGLLFLLLLSGCNRSGYIPENEVPKLPCRVDGACDATIIKMMTDLNKKGIKVASVGQNYLISIPA
SALFADQSPRLNWASYSLLNEIAAFLKQFRKIAITVTSYSSKYVSVKRERALTLARSRVVSEYLWSQGVDSRIIFTQGLG
SDKPITSYTLGGDRSPNARVEITFRRAVA

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=135, Percent_Identity=31.1111111111111, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 21057; Mature: 21057

Theoretical pI: Translated: 10.38; Mature: 10.38

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSLRTNYIYVLFKTTGLLFLLLLSGCNRSGYIPENEVPKLPCRVDGACDATIIKMMTDL
CCCCCCCEEEEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC
NKKGIKVASVGQNYLISIPASALFADQSPRLNWASYSLLNEIAAFLKQFRKIAITVTSYS
CCCCEEEEECCCCEEEECCCHHEECCCCCCCCHHHHHHHHHHHHHHHHHHHEEEEEEECC
SKYVSVKRERALTLARSRVVSEYLWSQGVDSRIIFTQGLGSDKPITSYTLGGDRSPNARV
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCEE
EITFRRAVA
EEEEEECCC
>Mature Secondary Structure
MRSLRTNYIYVLFKTTGLLFLLLLSGCNRSGYIPENEVPKLPCRVDGACDATIIKMMTDL
CCCCCCCEEEEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC
NKKGIKVASVGQNYLISIPASALFADQSPRLNWASYSLLNEIAAFLKQFRKIAITVTSYS
CCCCEEEEECCCCEEEECCCHHEECCCCCCCCHHHHHHHHHHHHHHHHHHHEEEEEEECC
SKYVSVKRERALTLARSRVVSEYLWSQGVDSRIIFTQGLGSDKPITSYTLGGDRSPNARV
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCEE
EITFRRAVA
EEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922 [H]