Click here to switch to the map view.

The map label for this gene is icmS

Identifier: 54293435

GI number: 54293435

Start: 526307

End: 526651

Strand: Direct

Name: icmS

Synonym: lpl0484

Alternate gene names: NA

Gene position: 526307-526651 (Clockwise)

Preceding gene: 54293434

Following gene: 54293436

Centisome position: 15.73

GC content: 41.16

Gene sequence:

>345_bases
ATGGAGCGAGATATTAGCAAGTGTATGGCAAAGATTGCAGCAAGCATGAATGCGAAATTTTACCTGAACGATAGATTTGT
AAGTTTTGATGAAGTTTTTTCAGAAACGGGTTTGCTACCGGCCATTGCCAAGAGAGCGGATCAATTGTGTTCCTTGTGTT
TGGGTTATGGTTTGGGAGCGACTTATGACGAGTCTGAAGGAGCGTTACTAGGTATTAGAGTGGTTTTTGATGAAGTGACT
CCGAATGTATTACGTTTGTTATGTATGACGGATGTTATGAATGAGCTTATTCAAGGGGGCCCAAGTCGTGATTATACTCC
CCTGGATGAGTTAATGTATGATTAG

Upstream 100 bases:

>100_bases
GATAATTGAACATTATGGTTTCACTGTCCCGGTTTTTTTACGCTGGCTCAGAAGTTTTTTAGCTGGTTCAGTTAGATCTG
CTAGACCTTGGTGGAGATAA

Downstream 100 bases:

>100_bases
TTGTTTGTAAAGAATTAGAAAGTTTTATTGGACCAAGATATATTGAAAGATATATTTTGATATATGTAAAGTAAGAGATT
TAGCTCAGGAGTGGTAATAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 114; Mature: 114

Protein sequence:

>114_residues
MERDISKCMAKIAASMNAKFYLNDRFVSFDEVFSETGLLPAIAKRADQLCSLCLGYGLGATYDESEGALLGIRVVFDEVT
PNVLRLLCMTDVMNELIQGGPSRDYTPLDELMYD

Sequences:

>Translated_114_residues
MERDISKCMAKIAASMNAKFYLNDRFVSFDEVFSETGLLPAIAKRADQLCSLCLGYGLGATYDESEGALLGIRVVFDEVT
PNVLRLLCMTDVMNELIQGGPSRDYTPLDELMYD
>Mature_114_residues
MERDISKCMAKIAASMNAKFYLNDRFVSFDEVFSETGLLPAIAKRADQLCSLCLGYGLGATYDESEGALLGIRVVFDEVT
PNVLRLLCMTDVMNELIQGGPSRDYTPLDELMYD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12673; Mature: 12673

Theoretical pI: Translated: 4.11; Mature: 4.11

Prosite motif: PS00238 OPSIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.5 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
8.8 %Cys+Met (Translated Protein)
3.5 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
8.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERDISKCMAKIAASMNAKFYLNDRFVSFDEVFSETGLLPAIAKRADQLCSLCLGYGLGA
CCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCC
TYDESEGALLGIRVVFDEVTPNVLRLLCMTDVMNELIQGGPSRDYTPLDELMYD
CCCCCCCCEEHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCC
>Mature Secondary Structure
MERDISKCMAKIAASMNAKFYLNDRFVSFDEVFSETGLLPAIAKRADQLCSLCLGYGLGA
CCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCC
TYDESEGALLGIRVVFDEVTPNVLRLLCMTDVMNELIQGGPSRDYTPLDELMYD
CCCCCCCCEEHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA