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The map label for this gene is ytfH [H]

Identifier: 54293427

GI number: 54293427

Start: 518786

End: 519166

Strand: Direct

Name: ytfH [H]

Synonym: lpl0476

Alternate gene names: 54293427

Gene position: 518786-519166 (Clockwise)

Preceding gene: 54293426

Following gene: 54293429

Centisome position: 15.51

GC content: 35.17

Gene sequence:

>381_bases
ATGTCTCATCCTGATTATAGTGTTTATAACGAGAAGTGCCCATCACAAAATGTACTTGAAGGTATAAGTGATAAATGGTC
TATATTGGTCATTAGCCTTTTATCCCAAAAAATATACCGTTTTGGAGAGTTAAAACGTGAAATCGGTGGAATATCACCTA
AAATGTTGACGCAAACATTACTGAAATTGGAGCGATATGGCTTTGTCCAAAGACAATCTTATCCTGTTTTACCTATGAAG
GTTGAGTATTCATTAACCAGATTGGGTAAGGAATTGAGTGCCATATTGGTTTTACTTACTCGTTGGACTGAAACCAATAT
GGATAAAATAATCAATGCGGAAAAAACATTTTGTGAACAGAAGCTTGGTTGTCATGCTTGA

Upstream 100 bases:

>100_bases
TGAACAGCATTTGCAACGATTTAAGTTACTGATGAATAAAGCTCGAACCCATTTTATTCAGTTTGAAGGTCGTTATTAAT
TAGAAATAGGGAGTTCAAAT

Downstream 100 bases:

>100_bases
TTTATTGGAACCATTTGATTAAAGTTTCCGAACCTAAATGGTCATGGATATAGGTTAAATAGCGGGTTAACTCCAGAGCA
TAATCCTCTTCAGAAACAGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 126; Mature: 125

Protein sequence:

>126_residues
MSHPDYSVYNEKCPSQNVLEGISDKWSILVISLLSQKIYRFGELKREIGGISPKMLTQTLLKLERYGFVQRQSYPVLPMK
VEYSLTRLGKELSAILVLLTRWTETNMDKIINAEKTFCEQKLGCHA

Sequences:

>Translated_126_residues
MSHPDYSVYNEKCPSQNVLEGISDKWSILVISLLSQKIYRFGELKREIGGISPKMLTQTLLKLERYGFVQRQSYPVLPMK
VEYSLTRLGKELSAILVLLTRWTETNMDKIINAEKTFCEQKLGCHA
>Mature_125_residues
SHPDYSVYNEKCPSQNVLEGISDKWSILVISLLSQKIYRFGELKREIGGISPKMLTQTLLKLERYGFVQRQSYPVLPMKV
EYSLTRLGKELSAILVLLTRWTETNMDKIINAEKTFCEQKLGCHA

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=105, Percent_Identity=41.9047619047619, Blast_Score=103, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 14528; Mature: 14397

Theoretical pI: Translated: 9.13; Mature: 9.13

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHPDYSVYNEKCPSQNVLEGISDKWSILVISLLSQKIYRFGELKREIGGISPKMLTQTL
CCCCCCCCHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
LKLERYGFVQRQSYPVLPMKVEYSLTRLGKELSAILVLLTRWTETNMDKIINAEKTFCEQ
HHHHHHCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
KLGCHA
HCCCCC
>Mature Secondary Structure 
SHPDYSVYNEKCPSQNVLEGISDKWSILVISLLSQKIYRFGELKREIGGISPKMLTQTL
CCCCCCCHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
LKLERYGFVQRQSYPVLPMKVEYSLTRLGKELSAILVLLTRWTETNMDKIINAEKTFCEQ
HHHHHHCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
KLGCHA
HCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]