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The map label for this gene is 54293212

Identifier: 54293212

GI number: 54293212

Start: 289451

End: 290989

Strand: Direct

Name: 54293212

Synonym: lpl0260

Alternate gene names: NA

Gene position: 289451-290989 (Clockwise)

Preceding gene: 54293211

Following gene: 54293214

Centisome position: 8.65

GC content: 41.13

Gene sequence:

>1539_bases
ATGACGACACTGTGTTTTATATTAGGCGATCAACTCAATGAAACAATCGCCTCACTTGCGGCAATTAATAAACAGAAGGA
CATTGTATTTTTATGTGAAGTGGCAGAAGAAACTTCTTATGTCTCTCATCATCCGAAAAAAATCGCGTTCTTATTTTCGG
CAATGCGTCATTTTGCGCAACAATTGAAAAAGAAAGGTTATCGAGTCCGCTATACGGCATTCGATGATCCTCGCAATCAA
GGCAGTTTTGCCAAAGAATTGCTTCGTGCGATTGAAGAGGAGCAGGTGTCAGCAATAAGCCTTACTGAACCTGGAGAGTG
GCGTGTTCTGAAAATATTCCATGATTTAAAAAGCCAATTGACTATTCCTGTTACTCTACATGAAGACAATCGGTTTTTAT
GCAAAATTAATGAGTTCAGAAATTGGGCTAAGGAAAAAAAACAGCTACGGATGGAGTTTTTTTACCGGATGATGCGCCAA
AAATATCATCTTCTGGTCGATAATGATGGGAAACCGGTTGGCGGCTCATGGAATTATGATGCTCAAAATCGTAAAAATGC
TAATCACATCAGTTCATTCCCCAAGCGTTTAGAGCATACCAGGGATGTGATAACTGATGAGGTTTTGGGCTTGGTTTCAG
CGCGTTTTGCCAAGCACTTTGGTCAGTGCCATCCCTTTAATTTGGCAGTGACCCGCGAGCAAGCATTAGAAGAAGCCGAT
TATTTTATGGAACATTTTCTTTGCAATTTCGGTGCCTACCAGGATGCCATGCTCAAAGATGAAATCAGCTTATATCATTC
AAAACTGTCGTTTTATCTAAATGCCGGGCTTTTGTTGCCTTTGGAATTGTGTCAAATGGCAGAGCAAGCCTATTTCTCAA
AGCAAATGCCTCTTAACTCGGTAGAAGGGTTCATACGCCAAATTTTAGGATGGCGAGAATATGTGAGGGGTATTTATTGG
CTTTTTATGCCGGATTACGGCGAGATGAACTATTTTAATGCATGCAGGCCGTTGCCTTCCTTTTTTTGGGGAGAGGAAAC
AGGAATGTTTTGTATCAAGGAAGTGGTACGTCAGACCTCGACTGAAGCCTATTCCCACCATATTCAGCGGTTGATGATAA
CAGGTAATTTTGCCTTGCTTGCAGGTTTAGATCCCAAACAAGTTTGTGAGTGGTATCTTGCTGTTTATGCTGATGCGTAT
GAATGGGTGGAGTTACCTAATACATTGGGTATGGCTCTTTATGCGGATGGCGGGCTGATGGCCAGTAAACCGTATGCCGC
CAGTGGGAAATACATTCACCGCATGAGTAATTTTTGCCAATCCTGCTATTATAATCCCAATGATCTTTTGGGTGAAAAGG
CATGTCCTTTTAATGCGCTTTATTGGAATTTTCTTCACCAAAATCAAGAAAAATTAAAAGATAACCCTCGCCTTCGTTAT
GCCTACATGAATTGGCAAAAAATGGATTTTGATAAACAAAAGAAGACTATCCATAAAGCACAGCGAATATTGGCAGACTT
GGACTCTGCCAATCTCTGA

Upstream 100 bases:

>100_bases
AATCCGAACAACAGCTGGATCACAGGGCAAGTGATTGCTGTTGATGGCGGATTAAGCCGAGTTCGGCCCAAGATGAAAAT
TTAATGAAACTATAATTCTT

Downstream 100 bases:

>100_bases
TGTCTTATTTGATATAACTTGCCACATAGATTGTCGCTATCGAACTCCAGGAGCATAGTACTATACCCCATAGCCAATCA
AGGAATGCCATGCCGACAGG

Product: hypothetical protein

Products: NA

Alternate protein names: Deoxyribodipyrimidine Photolyase-Like Protein; Photolyase; Deoxyribodipyrimidine Photolyase Family Protein; Deoxyribodipyrimidine Photolyase; Photolyase Protein Family Protein; Deoxyribodipyrimidine Photolyase-Like Protein Protein; Photolyase Family Protein; Cryptochrome/Photolyase; DNA Photolyase; Bcct Transporter; Protein Related Deoxyribodipyrimidine Photolyase; Deoxyribodipyrimidine Photo-Lyase; Cryptochrome/Photolyase-Related; Photolyase Related Protein; BCCT Transporter; Alpha-Deoxyribodipyrimidine Photolyase-Related Protein; Deoxyribodipyrimidine Photolyase Related Protein; A Deoxyribodipyrimidine Photolyase-Like Protein; Deoxyribodipyrimidine Photolyase Homolog

Number of amino acids: Translated: 512; Mature: 511

Protein sequence:

>512_residues
MTTLCFILGDQLNETIASLAAINKQKDIVFLCEVAEETSYVSHHPKKIAFLFSAMRHFAQQLKKKGYRVRYTAFDDPRNQ
GSFAKELLRAIEEEQVSAISLTEPGEWRVLKIFHDLKSQLTIPVTLHEDNRFLCKINEFRNWAKEKKQLRMEFFYRMMRQ
KYHLLVDNDGKPVGGSWNYDAQNRKNANHISSFPKRLEHTRDVITDEVLGLVSARFAKHFGQCHPFNLAVTREQALEEAD
YFMEHFLCNFGAYQDAMLKDEISLYHSKLSFYLNAGLLLPLELCQMAEQAYFSKQMPLNSVEGFIRQILGWREYVRGIYW
LFMPDYGEMNYFNACRPLPSFFWGEETGMFCIKEVVRQTSTEAYSHHIQRLMITGNFALLAGLDPKQVCEWYLAVYADAY
EWVELPNTLGMALYADGGLMASKPYAASGKYIHRMSNFCQSCYYNPNDLLGEKACPFNALYWNFLHQNQEKLKDNPRLRY
AYMNWQKMDFDKQKKTIHKAQRILADLDSANL

Sequences:

>Translated_512_residues
MTTLCFILGDQLNETIASLAAINKQKDIVFLCEVAEETSYVSHHPKKIAFLFSAMRHFAQQLKKKGYRVRYTAFDDPRNQ
GSFAKELLRAIEEEQVSAISLTEPGEWRVLKIFHDLKSQLTIPVTLHEDNRFLCKINEFRNWAKEKKQLRMEFFYRMMRQ
KYHLLVDNDGKPVGGSWNYDAQNRKNANHISSFPKRLEHTRDVITDEVLGLVSARFAKHFGQCHPFNLAVTREQALEEAD
YFMEHFLCNFGAYQDAMLKDEISLYHSKLSFYLNAGLLLPLELCQMAEQAYFSKQMPLNSVEGFIRQILGWREYVRGIYW
LFMPDYGEMNYFNACRPLPSFFWGEETGMFCIKEVVRQTSTEAYSHHIQRLMITGNFALLAGLDPKQVCEWYLAVYADAY
EWVELPNTLGMALYADGGLMASKPYAASGKYIHRMSNFCQSCYYNPNDLLGEKACPFNALYWNFLHQNQEKLKDNPRLRY
AYMNWQKMDFDKQKKTIHKAQRILADLDSANL
>Mature_511_residues
TTLCFILGDQLNETIASLAAINKQKDIVFLCEVAEETSYVSHHPKKIAFLFSAMRHFAQQLKKKGYRVRYTAFDDPRNQG
SFAKELLRAIEEEQVSAISLTEPGEWRVLKIFHDLKSQLTIPVTLHEDNRFLCKINEFRNWAKEKKQLRMEFFYRMMRQK
YHLLVDNDGKPVGGSWNYDAQNRKNANHISSFPKRLEHTRDVITDEVLGLVSARFAKHFGQCHPFNLAVTREQALEEADY
FMEHFLCNFGAYQDAMLKDEISLYHSKLSFYLNAGLLLPLELCQMAEQAYFSKQMPLNSVEGFIRQILGWREYVRGIYWL
FMPDYGEMNYFNACRPLPSFFWGEETGMFCIKEVVRQTSTEAYSHHIQRLMITGNFALLAGLDPKQVCEWYLAVYADAYE
WVELPNTLGMALYADGGLMASKPYAASGKYIHRMSNFCQSCYYNPNDLLGEKACPFNALYWNFLHQNQEKLKDNPRLRYA
YMNWQKMDFDKQKKTIHKAQRILADLDSANL

Specific function: Unknown

COG id: COG3046

COG function: function code R; Uncharacterized protein related to deoxyribodipyrimidine photolyase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 59847; Mature: 59716

Theoretical pI: Translated: 7.72; Mature: 7.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTLCFILGDQLNETIASLAAINKQKDIVFLCEVAEETSYVSHHPKKIAFLFSAMRHFAQ
CCEEEEEHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHCCHHHHHHHHHHHHHHHH
QLKKKGYRVRYTAFDDPRNQGSFAKELLRAIEEEQVSAISLTEPGEWRVLKIFHDLKSQL
HHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCEEEECCCCCEEHHHHHHHHHHCE
TIPVTLHEDNRFLCKINEFRNWAKEKKQLRMEFFYRMMRQKYHLLVDNDGKPVGGSWNYD
EEEEEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCCCCCCCCCCC
AQNRKNANHISSFPKRLEHTRDVITDEVLGLVSARFAKHFGQCHPFNLAVTREQALEEAD
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHH
YFMEHFLCNFGAYQDAMLKDEISLYHSKLSFYLNAGLLLPLELCQMAEQAYFSKQMPLNS
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHH
VEGFIRQILGWREYVRGIYWLFMPDYGEMNYFNACRPLPSFFWGEETGMFCIKEVVRQTS
HHHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHCCCCHHHCCCCCCHHHHHHHHHHHH
TEAYSHHIQRLMITGNFALLAGLDPKQVCEWYLAVYADAYEWVELPNTLGMALYADGGLM
HHHHHHHHHHHHEECCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCHHCEEEEECCCCE
ASKPYAASGKYIHRMSNFCQSCYYNPNDLLGEKACPFNALYWNFLHQNQEKLKDNPRLRY
ECCCCCCCCHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHCCHHHHCCCCCEEE
AYMNWQKMDFDKQKKTIHKAQRILADLDSANL
EEECCHHCCCHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TTLCFILGDQLNETIASLAAINKQKDIVFLCEVAEETSYVSHHPKKIAFLFSAMRHFAQ
CEEEEEHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHCCHHHHHHHHHHHHHHHH
QLKKKGYRVRYTAFDDPRNQGSFAKELLRAIEEEQVSAISLTEPGEWRVLKIFHDLKSQL
HHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCEEEECCCCCEEHHHHHHHHHHCE
TIPVTLHEDNRFLCKINEFRNWAKEKKQLRMEFFYRMMRQKYHLLVDNDGKPVGGSWNYD
EEEEEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCCCCCCCCCCC
AQNRKNANHISSFPKRLEHTRDVITDEVLGLVSARFAKHFGQCHPFNLAVTREQALEEAD
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHH
YFMEHFLCNFGAYQDAMLKDEISLYHSKLSFYLNAGLLLPLELCQMAEQAYFSKQMPLNS
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHH
VEGFIRQILGWREYVRGIYWLFMPDYGEMNYFNACRPLPSFFWGEETGMFCIKEVVRQTS
HHHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHCCCCHHHCCCCCCHHHHHHHHHHHH
TEAYSHHIQRLMITGNFALLAGLDPKQVCEWYLAVYADAYEWVELPNTLGMALYADGGLM
HHHHHHHHHHHHEECCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCHHCEEEEECCCCE
ASKPYAASGKYIHRMSNFCQSCYYNPNDLLGEKACPFNALYWNFLHQNQEKLKDNPRLRY
ECCCCCCCCHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHCCHHHHCCCCCEEE
AYMNWQKMDFDKQKKTIHKAQRILADLDSANL
EEECCHHCCCHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA