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The map label for this gene is intR [H]

Identifier: 54293140

GI number: 54293140

Start: 206729

End: 207934

Strand: Direct

Name: intR [H]

Synonym: lpl0179

Alternate gene names: 54293140

Gene position: 206729-207934 (Clockwise)

Preceding gene: 54293139

Following gene: 54293142

Centisome position: 6.18

GC content: 44.28

Gene sequence:

>1206_bases
ATGGGTGGAAAACGGCAACAAGGCAACGAACTGCAGCCTCCGCGCGGTGTAAGTATCCGTCAGTGGGAAACTGGATCCGC
AATTCGGATTATCTTCAGTTATCGCGGAGTACAGTGCCGCGAGACGTTGAAACTGGAGCCCACCAAGGCGAATCTAAAAT
ATGCCGAGCGGTTGCGGGGCGAGATCATTAATGCAATCGCCCTGGGAACATTTAACTATGCCGATTATTTCCCTGACTCC
AAACGTGCAAAGTTATTTGGCCATGCAATCATCAAAGCCACAACGGCTGAGTTACTCAAGGATTACATGGCCATTGCTGA
GAGAACTTTGGAGGCCAGTACTTACAATGGCTATAGAAAAGTTTGTGAGGCTCATTTATATCCTGCTTTTGGTAAAATAC
CCATTCGTGAATTATCACCTGTGATTATCCGTAACTGGATTACAGGGTTAAATGTTACGGTAAAAACGGTTCGCAATATT
TTGACTCCCCTGCGAAATATGCTGGACCAAGCTATGAATGATGGAATTATCGAACGCAACCCCCTTGATAGATTGGTGCT
TTCTAAATTGCTCAATAAGAAAACCAGTAAAAGTGACTGGGAGGTTGACCCATTTGATCAGGATGAAATTAAGGCAATTC
TGGATGCAGCAACTGGACAGGCAAGAAACTTGTTTCAATTTGCTTTTTTTTCAGGTTTGAGAACATCTGAGCTTATTGCA
TTGGAGTGGAATGATATTGATTGGCTCAAAGGAACTGTCCGTGTATCTAAGGCGGTAGTTTTAAAACAGGAAAAGGGAAC
TAAAACAAAATCAGGGGTGAGGGATGTGTTATTACTACCCCCAGCTGTTGATGCATTAAAAAATCAAAAAGCATTTACCT
ATCTGGAAGGCTCTAGGGTTTTTTATAACCCAAGAACCAATTCTCCGTGGGAGACAGACGGCCAGATTCGCAAAACTTGC
TGGACGCATCTTTTGAAAAAAGCAGGCGTGCGCTATCGCAATCCTTACCAAACGCGGCATACTTACGCATCAATGCTGCT
TTCTGCCGGTGAGAACCCTTTATGGCTAGCCACACAGATGGGGCATAGAGATACGGAGATGATTATCAAACATTATGGGC
GGTGGATCCCTGATAAGTCCACTGTTGCTGGATATCAACCGGTGAGTGATTGGAATTTAAGCATGGGTACTACCAAGATC
GGATAG

Upstream 100 bases:

>100_bases
CAGTACACGCTAAACGCAAACGTGGTATCTGGCTCGATGGTGTACAATGTAAATTAGGACCAGACGGCAACATATGGATT
AATTTAGTTGAGGTTGAAAA

Downstream 100 bases:

>100_bases
TTAATTTATGCGGTCTAGTTGAGATTCTTAACAAGATATGTAAAGTTACTCAATCAAATTGCAGAGTACATGTTTCTTGC
GAACGCTCGATTTTTGACAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 401; Mature: 400

Protein sequence:

>401_residues
MGGKRQQGNELQPPRGVSIRQWETGSAIRIIFSYRGVQCRETLKLEPTKANLKYAERLRGEIINAIALGTFNYADYFPDS
KRAKLFGHAIIKATTAELLKDYMAIAERTLEASTYNGYRKVCEAHLYPAFGKIPIRELSPVIIRNWITGLNVTVKTVRNI
LTPLRNMLDQAMNDGIIERNPLDRLVLSKLLNKKTSKSDWEVDPFDQDEIKAILDAATGQARNLFQFAFFSGLRTSELIA
LEWNDIDWLKGTVRVSKAVVLKQEKGTKTKSGVRDVLLLPPAVDALKNQKAFTYLEGSRVFYNPRTNSPWETDGQIRKTC
WTHLLKKAGVRYRNPYQTRHTYASMLLSAGENPLWLATQMGHRDTEMIIKHYGRWIPDKSTVAGYQPVSDWNLSMGTTKI
G

Sequences:

>Translated_401_residues
MGGKRQQGNELQPPRGVSIRQWETGSAIRIIFSYRGVQCRETLKLEPTKANLKYAERLRGEIINAIALGTFNYADYFPDS
KRAKLFGHAIIKATTAELLKDYMAIAERTLEASTYNGYRKVCEAHLYPAFGKIPIRELSPVIIRNWITGLNVTVKTVRNI
LTPLRNMLDQAMNDGIIERNPLDRLVLSKLLNKKTSKSDWEVDPFDQDEIKAILDAATGQARNLFQFAFFSGLRTSELIA
LEWNDIDWLKGTVRVSKAVVLKQEKGTKTKSGVRDVLLLPPAVDALKNQKAFTYLEGSRVFYNPRTNSPWETDGQIRKTC
WTHLLKKAGVRYRNPYQTRHTYASMLLSAGENPLWLATQMGHRDTEMIIKHYGRWIPDKSTVAGYQPVSDWNLSMGTTKI
G
>Mature_400_residues
GGKRQQGNELQPPRGVSIRQWETGSAIRIIFSYRGVQCRETLKLEPTKANLKYAERLRGEIINAIALGTFNYADYFPDSK
RAKLFGHAIIKATTAELLKDYMAIAERTLEASTYNGYRKVCEAHLYPAFGKIPIRELSPVIIRNWITGLNVTVKTVRNIL
TPLRNMLDQAMNDGIIERNPLDRLVLSKLLNKKTSKSDWEVDPFDQDEIKAILDAATGQARNLFQFAFFSGLRTSELIAL
EWNDIDWLKGTVRVSKAVVLKQEKGTKTKSGVRDVLLLPPAVDALKNQKAFTYLEGSRVFYNPRTNSPWETDGQIRKTCW
THLLKKAGVRYRNPYQTRHTYASMLLSAGENPLWLATQMGHRDTEMIIKHYGRWIPDKSTVAGYQPVSDWNLSMGTTKIG

Specific function: Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1787607, Length=406, Percent_Identity=33.9901477832512, Blast_Score=187, Evalue=7e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR022000
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF12167 DUF3596; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 45584; Mature: 45453

Theoretical pI: Translated: 10.23; Mature: 10.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGGKRQQGNELQPPRGVSIRQWETGSAIRIIFSYRGVQCRETLKLEPTKANLKYAERLRG
CCCCCCCCCCCCCCCCCCEEEECCCCEEEEEEECCCCCCHHHEEECCCCCHHHHHHHHHH
EIINAIALGTFNYADYFPDSKRAKLFGHAIIKATTAELLKDYMAIAERTLEASTYNGYRK
HHHHHHHCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VCEAHLYPAFGKIPIRELSPVIIRNWITGLNVTVKTVRNILTPLRNMLDQAMNDGIIERN
HHHHHCCCCCCCCCHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PLDRLVLSKLLNKKTSKSDWEVDPFDQDEIKAILDAATGQARNLFQFAFFSGLRTSELIA
HHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEEE
LEWNDIDWLKGTVRVSKAVVLKQEKGTKTKSGVRDVLLLPPAVDALKNQKAFTYLEGSRV
EECCCCHHHHHHHHHHHHEEEECCCCCCCHHCCCCEEECCCHHHHHCCCCCEEEEECCEE
FYNPRTNSPWETDGQIRKTCWTHLLKKAGVRYRNPYQTRHTYASMLLSAGENPLWLATQM
EECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECC
GHRDTEMIIKHYGRWIPDKSTVAGYQPVSDWNLSMGTTKIG
CCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
GGKRQQGNELQPPRGVSIRQWETGSAIRIIFSYRGVQCRETLKLEPTKANLKYAERLRG
CCCCCCCCCCCCCCCCCEEEECCCCEEEEEEECCCCCCHHHEEECCCCCHHHHHHHHHH
EIINAIALGTFNYADYFPDSKRAKLFGHAIIKATTAELLKDYMAIAERTLEASTYNGYRK
HHHHHHHCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VCEAHLYPAFGKIPIRELSPVIIRNWITGLNVTVKTVRNILTPLRNMLDQAMNDGIIERN
HHHHHCCCCCCCCCHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PLDRLVLSKLLNKKTSKSDWEVDPFDQDEIKAILDAATGQARNLFQFAFFSGLRTSELIA
HHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEEE
LEWNDIDWLKGTVRVSKAVVLKQEKGTKTKSGVRDVLLLPPAVDALKNQKAFTYLEGSRV
EECCCCHHHHHHHHHHHHEEEECCCCCCCHHCCCCEEECCCHHHHHCCCCCEEEEECCEE
FYNPRTNSPWETDGQIRKTCWTHLLKKAGVRYRNPYQTRHTYASMLLSAGENPLWLATQM
EECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECC
GHRDTEMIIKHYGRWIPDKSTVAGYQPVSDWNLSMGTTKIG
CCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]