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The map label for this gene is cydC [H]

Identifier: 54020282

GI number: 54020282

Start: 817157

End: 818767

Strand: Direct

Name: cydC [H]

Synonym: mhp648

Alternate gene names: 54020282

Gene position: 817157-818767 (Clockwise)

Preceding gene: 54020281

Following gene: 54020283

Centisome position: 91.53

GC content: 19.06

Gene sequence:

>1611_bases
ATGAAACTTTTTAGTATCATAAACTATTTTATTAATTTAAATAAACCATCTAATATTTTTATTTTTTTTCTTAAGTTTTT
ATTGCATTCCTTTTTAAATCTTCATTTATTTACGTATTCTTATTTAATAAAATTTATAAAAAACAAAGTAGAAACTCAAA
ATCCAGAATTTATAACTTGAATTTGTATTTCAGTTGTCTCTTTTGTTTTGTTTTTTATCATTGAATTAATATTAATTTTT
AAAACAAATAATGTTTTATACAATACCAAAAGAAAAAATATTAATTTTTTAACTAACAAAATTGCAAAAGAATCTTATGA
TTATATTTTAGAAAACAAAACTTCATATATTTCTAAGTACAATGTAAATTTATCAGTTGCTTTTTCAATGAATGAATTAA
TTTATTCTATTCTTTTTTCATCAATTTTTAATATTCCTATTACTATTTTATTTTTGTTTTTGACAGAAGTAAATATTTGA
ATAATTATTTTACATTGCGCTGTTGCTTTGATTATTTCTACTATTATATTAATAAATTTTTCTTCAGTTTTAAACAAATT
ACAAGAAAAATTAGAAAAAATATTAAGTTTAAATGCAAAAAAACAAATCAAATTTTTTAGTTTATTCAAACTATTTTACT
TTTTCAATAAAAGAAAAATTTTTAAAACCTTCTTAAAAAATCAAGTTTTAGATAAATATACAAAAGAATTTAAATTACTT
AAACAGTTTTATTACAATCAATATTTTTTGGAAATTATTTTTTCAGTTTTCTTATTTAGTTCATTAATTACTTTATCAGT
TCTAACATATACTAAAACATTTCCTTGAGAATCCTTTATTAGTTTATTTTCTTTAGCTACTAGTTTTATTTTTTCAATTT
CTTCAGTTTTTTCTTTTACTTTAATTTTTAAAACTCTTACACCTTATTTAGAAATTTTTATTACTCCACAAGAAGTAAAT
TCTTCTACAAAAATAGAATTAAATGAGGAAATAAAAAGCATTTCAATTAAAAATTTAAATTTTAAGTACAATGAAAATGA
AATGGTTTTTCAAAATTTAAACCTGGAATTTTTAACAACGAAAAAATATGGAATAATATCACCTTCAGGAAGAGGAAAAT
CCACACTTTTGAAATTAATTTCTGGTTTAATCACTAATTACGAAGGTCAAATACTAATAAACAACAAATTAGAATACAAA
AGTATTTCAGATGAAAGTTTAAGAAAAAATATAGCTTTACTTACAAATGAAAATGTTATTTTTCAAGATACTTTAGAGAA
TAACATAATTTTGTGAGATAAGAATTTAAACAAAAAAAAATTAGAATTTTTGGTTAATAAATATGAAATTTTAGAATTTT
CAGATTTAAATAAAGAAATAAATAATTCTGTTTTATCTGAAGGTGAAAAACAGAAAATTGCACTTGCAAGATTAGAGTAC
CAAGACTTAAATATTATGTGTTTGGATGAAGCATTTGATAATATATATAAAGATGATGTTTTAAAAATTTATAAAGATTT
TTTATCTCAGAAGAATAAAACAGTTTTTATTGTAAGCCATCATATTCCAGAAGAAATTAAGCATTTATTTGATGAAATTA
TTGAATTGTAG

Upstream 100 bases:

>100_bases
ATTACATATAAATACTTATAAACTTCTATATTAAAAAAATAACTTAATTGTTATTTTTTTAATATTAATTTATTTATAAA
ATCAAAGCATTCAGGGAATT

Downstream 100 bases:

>100_bases
GAAAAGCAATGAACCAACCACCAAGACATTTTTGATTTATTATTTGAAACTGAATTAATGTAATATTTACTATTGCTTTT
AATGTTTTTAGTATTATTTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 536; Mature: 536

Protein sequence:

>536_residues
MKLFSIINYFINLNKPSNIFIFFLKFLLHSFLNLHLFTYSYLIKFIKNKVETQNPEFITWICISVVSFVLFFIIELILIF
KTNNVLYNTKRKNINFLTNKIAKESYDYILENKTSYISKYNVNLSVAFSMNELIYSILFSSIFNIPITILFLFLTEVNIW
IIILHCAVALIISTIILINFSSVLNKLQEKLEKILSLNAKKQIKFFSLFKLFYFFNKRKIFKTFLKNQVLDKYTKEFKLL
KQFYYNQYFLEIIFSVFLFSSLITLSVLTYTKTFPWESFISLFSLATSFIFSISSVFSFTLIFKTLTPYLEIFITPQEVN
SSTKIELNEEIKSISIKNLNFKYNENEMVFQNLNLEFLTTKKYGIISPSGRGKSTLLKLISGLITNYEGQILINNKLEYK
SISDESLRKNIALLTNENVIFQDTLENNIILWDKNLNKKKLEFLVNKYEILEFSDLNKEINNSVLSEGEKQKIALARLEY
QDLNIMCLDEAFDNIYKDDVLKIYKDFLSQKNKTVFIVSHHIPEEIKHLFDEIIEL

Sequences:

>Translated_536_residues
MKLFSIINYFINLNKPSNIFIFFLKFLLHSFLNLHLFTYSYLIKFIKNKVETQNPEFIT*ICISVVSFVLFFIIELILIF
KTNNVLYNTKRKNINFLTNKIAKESYDYILENKTSYISKYNVNLSVAFSMNELIYSILFSSIFNIPITILFLFLTEVNI*
IIILHCAVALIISTIILINFSSVLNKLQEKLEKILSLNAKKQIKFFSLFKLFYFFNKRKIFKTFLKNQVLDKYTKEFKLL
KQFYYNQYFLEIIFSVFLFSSLITLSVLTYTKTFP*ESFISLFSLATSFIFSISSVFSFTLIFKTLTPYLEIFITPQEVN
SSTKIELNEEIKSISIKNLNFKYNENEMVFQNLNLEFLTTKKYGIISPSGRGKSTLLKLISGLITNYEGQILINNKLEYK
SISDESLRKNIALLTNENVIFQDTLENNIIL*DKNLNKKKLEFLVNKYEILEFSDLNKEINNSVLSEGEKQKIALARLEY
QDLNIMCLDEAFDNIYKDDVLKIYKDFLSQKNKTVFIVSHHIPEEIKHLFDEIIEL
>Mature_536_residues
MKLFSIINYFINLNKPSNIFIFFLKFLLHSFLNLHLFTYSYLIKFIKNKVETQNPEFIT*ICISVVSFVLFFIIELILIF
KTNNVLYNTKRKNINFLTNKIAKESYDYILENKTSYISKYNVNLSVAFSMNELIYSILFSSIFNIPITILFLFLTEVNI*
IIILHCAVALIISTIILINFSSVLNKLQEKLEKILSLNAKKQIKFFSLFKLFYFFNKRKIFKTFLKNQVLDKYTKEFKLL
KQFYYNQYFLEIIFSVFLFSSLITLSVLTYTKTFP*ESFISLFSLATSFIFSISSVFSFTLIFKTLTPYLEIFITPQEVN
SSTKIELNEEIKSISIKNLNFKYNENEMVFQNLNLEFLTTKKYGIISPSGRGKSTLLKLISGLITNYEGQILINNKLEYK
SISDESLRKNIALLTNENVIFQDTLENNIIL*DKNLNKKKLEFLVNKYEILEFSDLNKEINNSVLSEGEKQKIALARLEY
QDLNIMCLDEAFDNIYKDDVLKIYKDFLSQKNKTVFIVSHHIPEEIKHLFDEIIEL

Specific function: Somehow involved in the cytochrome D branch of aerobic respiration. Seems to be a component of a transport system [H]

COG id: COG1132

COG function: function code V; ABC-type multidrug transport system, ATPase and permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI42490749, Length=230, Percent_Identity=25.6521739130435, Blast_Score=79, Evalue=1e-14,
Organism=Homo sapiens, GI4557481, Length=430, Percent_Identity=23.953488372093, Blast_Score=79, Evalue=2e-14,
Organism=Homo sapiens, GI110832839, Length=467, Percent_Identity=23.3404710920771, Blast_Score=72, Evalue=1e-12,
Organism=Homo sapiens, GI42741659, Length=198, Percent_Identity=27.2727272727273, Blast_Score=69, Evalue=1e-11,
Organism=Homo sapiens, GI255708477, Length=204, Percent_Identity=25.9803921568627, Blast_Score=68, Evalue=3e-11,
Organism=Escherichia coli, GI1786654, Length=198, Percent_Identity=26.2626262626263, Blast_Score=86, Evalue=6e-18,
Organism=Escherichia coli, GI1787143, Length=289, Percent_Identity=25.6055363321799, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI1787112, Length=216, Percent_Identity=24.537037037037, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1786253, Length=194, Percent_Identity=27.8350515463918, Blast_Score=72, Evalue=9e-14,
Organism=Escherichia coli, GI1786398, Length=210, Percent_Identity=26.6666666666667, Blast_Score=64, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17558664, Length=260, Percent_Identity=26.5384615384615, Blast_Score=84, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI193208177, Length=382, Percent_Identity=24.3455497382199, Blast_Score=80, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI71984940, Length=243, Percent_Identity=27.1604938271605, Blast_Score=80, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI71996550, Length=220, Percent_Identity=25.4545454545455, Blast_Score=79, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI71992285, Length=202, Percent_Identity=27.7227722772277, Blast_Score=75, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI193202349, Length=264, Percent_Identity=24.2424242424242, Blast_Score=75, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17565938, Length=207, Percent_Identity=27.0531400966184, Blast_Score=74, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17569145, Length=473, Percent_Identity=22.4101479915433, Blast_Score=74, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI115534520, Length=227, Percent_Identity=25.1101321585903, Blast_Score=73, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17541710, Length=308, Percent_Identity=25.6493506493506, Blast_Score=73, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI71988343, Length=197, Percent_Identity=28.9340101522843, Blast_Score=72, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI212646699, Length=327, Percent_Identity=21.7125382262997, Blast_Score=71, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17569081, Length=426, Percent_Identity=24.8826291079812, Blast_Score=70, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI25146777, Length=277, Percent_Identity=27.7978339350181, Blast_Score=70, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17543740, Length=182, Percent_Identity=26.9230769230769, Blast_Score=69, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI193211015, Length=214, Percent_Identity=26.6355140186916, Blast_Score=69, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI71996809, Length=214, Percent_Identity=26.6355140186916, Blast_Score=68, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI193211017, Length=214, Percent_Identity=26.6355140186916, Blast_Score=68, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17567265, Length=323, Percent_Identity=22.6006191950464, Blast_Score=66, Evalue=6e-11,
Organism=Saccharomyces cerevisiae, GI6322980, Length=299, Percent_Identity=23.4113712374582, Blast_Score=77, Evalue=7e-15,
Organism=Saccharomyces cerevisiae, GI6323959, Length=216, Percent_Identity=26.3888888888889, Blast_Score=75, Evalue=3e-14,
Organism=Saccharomyces cerevisiae, GI6321752, Length=283, Percent_Identity=26.5017667844523, Blast_Score=69, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6322640, Length=220, Percent_Identity=26.8181818181818, Blast_Score=68, Evalue=3e-12,
Organism=Saccharomyces cerevisiae, GI6324985, Length=202, Percent_Identity=26.7326732673267, Blast_Score=67, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24585091, Length=224, Percent_Identity=24.1071428571429, Blast_Score=77, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24659289, Length=284, Percent_Identity=25.7042253521127, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI17136662, Length=243, Percent_Identity=25.9259259259259, Blast_Score=72, Evalue=1e-12,
Organism=Drosophila melanogaster, GI21357907, Length=221, Percent_Identity=28.0542986425339, Blast_Score=71, Evalue=2e-12,
Organism=Drosophila melanogaster, GI45550390, Length=337, Percent_Identity=25.2225519287834, Blast_Score=70, Evalue=3e-12,
Organism=Drosophila melanogaster, GI85726357, Length=185, Percent_Identity=27.5675675675676, Blast_Score=68, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24649703, Length=333, Percent_Identity=24.9249249249249, Blast_Score=66, Evalue=7e-11,
Organism=Drosophila melanogaster, GI45552355, Length=548, Percent_Identity=21.1678832116788, Blast_Score=65, Evalue=8e-11,
Organism=Drosophila melanogaster, GI45552341, Length=548, Percent_Identity=21.1678832116788, Blast_Score=65, Evalue=9e-11,
Organism=Drosophila melanogaster, GI45552339, Length=548, Percent_Identity=21.1678832116788, Blast_Score=65, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014223
- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR017940
- InterPro:   IPR001140
- InterPro:   IPR011527
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00664 ABC_membrane; PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 62499; Mature: 62499

Theoretical pI: Translated: 9.43; Mature: 9.43

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLFSIINYFINLNKPSNIFIFFLKFLLHSFLNLHLFTYSYLIKFIKNKVETQNPEFITI
CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHH
CISVVSFVLFFIIELILIFKTNNVLYNTKRKNINFLTNKIAKESYDYILENKTSYISKYN
HHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCHHHHEEEC
VNLSVAFSMNELIYSILFSSIFNIPITILFLFLTEVNIIIILHCAVALIISTIILINFSS
CEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLNKLQEKLEKILSLNAKKQIKFFSLFKLFYFFNKRKIFKTFLKNQVLDKYTKEFKLLKQ
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FYYNQYFLEIIFSVFLFSSLITLSVLTYTKTFPESFISLFSLATSFIFSISSVFSFTLIF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KTLTPYLEIFITPQEVNSSTKIELNEEIKSISIKNLNFKYNENEMVFQNLNLEFLTTKKY
HHHHHHHEEEECHHHCCCCCCEEEHHHHHHEEEEECCEEECCCCEEEEECCEEEEEECCC
GIISPSGRGKSTLLKLISGLITNYEGQILINNKLEYKSISDESLRKNIALLTNENVIFQD
EEECCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHCCEEEEECCCEEEEE
TLENNIILDKNLNKKKLEFLVNKYEILEFSDLNKEINNSVLSEGEKQKIALARLEYQDLN
CCCCCEEEECCCCHHHHHHHHHHHHHEEHHHHHHHHHHHHHCCCCHHHHHHHEEEECCCC
IMCLDEAFDNIYKDDVLKIYKDFLSQKNKTVFIVSHHIPEEIKHLFDEIIEL
EEEHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MKLFSIINYFINLNKPSNIFIFFLKFLLHSFLNLHLFTYSYLIKFIKNKVETQNPEFITI
CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHH
CISVVSFVLFFIIELILIFKTNNVLYNTKRKNINFLTNKIAKESYDYILENKTSYISKYN
HHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCHHHHEEEC
VNLSVAFSMNELIYSILFSSIFNIPITILFLFLTEVNIIIILHCAVALIISTIILINFSS
CEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLNKLQEKLEKILSLNAKKQIKFFSLFKLFYFFNKRKIFKTFLKNQVLDKYTKEFKLLKQ
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FYYNQYFLEIIFSVFLFSSLITLSVLTYTKTFPESFISLFSLATSFIFSISSVFSFTLIF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KTLTPYLEIFITPQEVNSSTKIELNEEIKSISIKNLNFKYNENEMVFQNLNLEFLTTKKY
HHHHHHHEEEECHHHCCCCCCEEEHHHHHHEEEEECCEEECCCCEEEEECCEEEEEECCC
GIISPSGRGKSTLLKLISGLITNYEGQILINNKLEYKSISDESLRKNIALLTNENVIFQD
EEECCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHCCEEEEECCCEEEEE
TLENNIILDKNLNKKKLEFLVNKYEILEFSDLNKEINNSVLSEGEKQKIALARLEYQDLN
CCCCCEEEECCCCHHHHHHHHHHHHHEEHHHHHHHHHHHHHCCCCHHHHHHHEEEECCCC
IMCLDEAFDNIYKDDVLKIYKDFLSQKNKTVFIVSHHIPEEIKHLFDEIIEL
EEEHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]