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The map label for this gene is nrdF

Identifier: 54020059

GI number: 54020059

Start: 186885

End: 187946

Strand: Direct

Name: nrdF

Synonym: mhp156

Alternate gene names: 54020059

Gene position: 186885-187946 (Clockwise)

Preceding gene: 54020058

Following gene: 54020060

Centisome position: 20.93

GC content: 31.83

Gene sequence:

>1062_bases
ATGATTAATTCAAAATTAAATAATAATAATAATAATAATAAATTAAAAATAAAAAACGACTACTACCATCAATCAGTTTC
GCCACTCGAATATGCGCTTAATAATTTTTCGGGAAAAATGCGATCAATCAACTGAAATATCATAAATGATCCAAAAGATC
TTGAAGTTTGAACCCGAATAGTGCAAAATTTCTGAATTCCAGAAAAAATTCCGCTTTCAAATGATCTTGAATCCTGAAGA
ACTTTATCACCTACCTGAAAAAAAGTAGTTACTCGCACTTTTACCGGACTTACTTTACTTGATACAATTCAGGCAACAAT
CGGTGATGTAGCCCAAATTAAACACTCTTTAACCGATCATGAACAGGTAATTTATACAAATTTCGCTTTTATGGTTGGGG
TTCATGCTCGTTCTTATGGTTCAATTTTTTCTACCCTTTGCTCAAGTGAAGAAATAGAAGAGGCGCATAACTGGGTAATC
AATAACGAAAAATTGCAAAAAAGGGCCAGAATTCTTATCCCTTTTTATGTAGGTGAAGATCCTTTAAAATCAAAAGTTGC
TGCTGCTTTAATGCCAGGTTTTCTCTTATATGGTGGTTTTTATCTTCCTTTTTATCTTTCTGCGCGTTCAAAACTGCCAA
ATACATCCGATGTTATTCGCCTGATTTTACGCGATAAAGTGATTCATAATTATTATTCAGGTTATAAATTTCAAAAAAAA
GTGGAAAAATTAAGCCCGGAAAAACAAGACGAAATTAAAAAATTTACCTTTGATCTATTATATAAACTAATTGAATTAGA
AAAAGATTATCTCTATGATTTATATTCTGAAGTTGGACTTGCTGAATCAGCAATAAAATTTAGCATTTATAATGCCGGGA
AATTCTTGCAAAATCTAGGATATGATTCACCTTTTTCAAAAGAGGAAACCGAAATTGAACCTGAAATTTTTAGTCAATTA
TCGGCTCGAGCTGATGAAAATCATGACTTTTTTTCAGGAAATGGCTCTTCTTATGTAATGGCGCTTGCTGAAGAAACTGA
AGATGAAGATTGGGAGTTTTAA

Upstream 100 bases:

>100_bases
AAAAAATCAATTTTTTAATTTACCGTTTATCAAAAAATACAAAAAAATATTTTTGATTTTTTGGTAAAATTAAGGCCCAA
GACACTAAAAAGAGCTAAAT

Downstream 100 bases:

>100_bases
AATGACAAATGATGAAAAATATGATATAATAAACAAATCTAAATTAAGAGGAGAAATTTTTGTTGTTTATTTTTCCTCAA
TTTCGAATAATACCCATCGG

Product: ribonucleotide-diphosphate reductase subunit beta

Products: NA

Alternate protein names: Ribonucleotide reductase small subunit [H]

Number of amino acids: Translated: 353; Mature: 353

Protein sequence:

>353_residues
MINSKLNNNNNNNKLKIKNDYYHQSVSPLEYALNNFSGKMRSINWNIINDPKDLEVWTRIVQNFWIPEKIPLSNDLESWR
TLSPTWKKVVTRTFTGLTLLDTIQATIGDVAQIKHSLTDHEQVIYTNFAFMVGVHARSYGSIFSTLCSSEEIEEAHNWVI
NNEKLQKRARILIPFYVGEDPLKSKVAAALMPGFLLYGGFYLPFYLSARSKLPNTSDVIRLILRDKVIHNYYSGYKFQKK
VEKLSPEKQDEIKKFTFDLLYKLIELEKDYLYDLYSEVGLAESAIKFSIYNAGKFLQNLGYDSPFSKEETEIEPEIFSQL
SARADENHDFFSGNGSSYVMALAEETEDEDWEF

Sequences:

>Translated_353_residues
MINSKLNNNNNNNKLKIKNDYYHQSVSPLEYALNNFSGKMRSIN*NIINDPKDLEV*TRIVQNF*IPEKIPLSNDLES*R
TLSPT*KKVVTRTFTGLTLLDTIQATIGDVAQIKHSLTDHEQVIYTNFAFMVGVHARSYGSIFSTLCSSEEIEEAHNWVI
NNEKLQKRARILIPFYVGEDPLKSKVAAALMPGFLLYGGFYLPFYLSARSKLPNTSDVIRLILRDKVIHNYYSGYKFQKK
VEKLSPEKQDEIKKFTFDLLYKLIELEKDYLYDLYSEVGLAESAIKFSIYNAGKFLQNLGYDSPFSKEETEIEPEIFSQL
SARADENHDFFSGNGSSYVMALAEETEDEDWEF
>Mature_353_residues
MINSKLNNNNNNNKLKIKNDYYHQSVSPLEYALNNFSGKMRSIN*NIINDPKDLEV*TRIVQNF*IPEKIPLSNDLES*R
TLSPT*KKVVTRTFTGLTLLDTIQATIGDVAQIKHSLTDHEQVIYTNFAFMVGVHARSYGSIFSTLCSSEEIEEAHNWVI
NNEKLQKRARILIPFYVGEDPLKSKVAAALMPGFLLYGGFYLPFYLSARSKLPNTSDVIRLILRDKVIHNYYSGYKFQKK
VEKLSPEKQDEIKKFTFDLLYKLIELEKDYLYDLYSEVGLAESAIKFSIYNAGKFLQNLGYDSPFSKEETEIEPEIFSQL
SARADENHDFFSGNGSSYVMALAEETEDEDWEF

Specific function: Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides [H]

COG id: COG0208

COG function: function code F; Ribonucleotide reductase, beta subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribonucleoside diphosphate reductase small chain family [H]

Homologues:

Organism=Escherichia coli, GI1789031, Length=316, Percent_Identity=50.6329113924051, Blast_Score=316, Evalue=1e-87,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009078
- InterPro:   IPR012348
- InterPro:   IPR000358 [H]

Pfam domain/function: PF00268 Ribonuc_red_sm [H]

EC number: =1.17.4.1 [H]

Molecular weight: Translated: 39879; Mature: 39879

Theoretical pI: Translated: 5.31; Mature: 5.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINSKLNNNNNNNKLKIKNDYYHQSVSPLEYALNNFSGKMRSINNIINDPKDLEVTRIVQ
CCCCCCCCCCCCCEEEEECCHHHCCCCHHHHHHHHHCHHHHHHHHHHCCCCCHHHHHHHH
NFIPEKIPLSNDLESRTLSPTKKVVTRTFTGLTLLDTIQATIGDVAQIKHSLTDHEQVIY
HHCCCCCCCCCCCHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
TNFAFMVGVHARSYGSIFSTLCSSEEIEEAHNWVINNEKLQKRARILIPFYVGEDPLKSK
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHCEEEEEEECCCHHHHH
VAAALMPGFLLYGGFYLPFYLSARSKLPNTSDVIRLILRDKVIHNYYSGYKFQKKVEKLS
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHC
PEKQDEIKKFTFDLLYKLIELEKDYLYDLYSEVGLAESAIKFSIYNAGKFLQNLGYDSPF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHEEEHHHHHHHHHHCCCCCCC
SKEETEIEPEIFSQLSARADENHDFFSGNGSSYVMALAEETEDEDWEF
CCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCCC
>Mature Secondary Structure
MINSKLNNNNNNNKLKIKNDYYHQSVSPLEYALNNFSGKMRSINNIINDPKDLEVTRIVQ
CCCCCCCCCCCCCEEEEECCHHHCCCCHHHHHHHHHCHHHHHHHHHHCCCCCHHHHHHHH
NFIPEKIPLSNDLESRTLSPTKKVVTRTFTGLTLLDTIQATIGDVAQIKHSLTDHEQVIY
HHCCCCCCCCCCCHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
TNFAFMVGVHARSYGSIFSTLCSSEEIEEAHNWVINNEKLQKRARILIPFYVGEDPLKSK
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHCEEEEEEECCCHHHHH
VAAALMPGFLLYGGFYLPFYLSARSKLPNTSDVIRLILRDKVIHNYYSGYKFQKKVEKLS
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHC
PEKQDEIKKFTFDLLYKLIELEKDYLYDLYSEVGLAESAIKFSIYNAGKFLQNLGYDSPF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHEEEHHHHHHHHHHCCCCCCC
SKEETEIEPEIFSQLSARADENHDFFSGNGSSYVMALAEETEDEDWEF
CCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8948633 [H]