Click here to switch to the map view.

The map label for this gene is hrcU [H]

Identifier: 53722644

GI number: 53722644

Start: 2196386

End: 2197468

Strand: Reverse

Name: hrcU [H]

Synonym: BPSS1621

Alternate gene names: 53722644

Gene position: 2197468-2196386 (Counterclockwise)

Preceding gene: 53722654

Following gene: 53722643

Centisome position: 69.26

GC content: 69.34

Gene sequence:

>1083_bases
ATGGCCGAAGAGAAAACCGAAGAGCCCACCGAGAAGAAGCTGAAGAAGGTGCGCGAGAAGGGCCAGGTCGCCAAGAGCAA
GGACATCGCCGACGCGATGACGCTCGCGGCCGCGATCGGCGTGCTCACGGCGTGCGAATCGATGCTCACGGGCGGCCTCT
CGCGCGCGGTTCGCACCGCGCTCGACTTCGTGCGCGGCGAGCGCACCCCGCAGGCGACGCTCGCCGCGCTGCACGATCTC
GCCGCGAGCGCCGCGCTGACGATGCTGCCGTTCGTCGCCGCCGCGATCGTCGCGGGCATCGTGTCGCAGGCGCCGCAGGC
GGGCTTCCTGATCACGCTCGAGCCCGTGATGCCGAAGTTCGACGCGATCAATCCGATGGCGGGCATCAAGCGGATCTTCT
CGCTGAAGTCGCTGCTCGAGCTCGTGAAGATGATCGTCAAGGCGCTCGTGCTCGCGTGCGTGGCATGGAAGATGATGACC
TCGCTGTTTCCGCTCGTCGTCGCGAGCGTGTACGAAGCGACGCCGCAGCTCGCGCGCGTGCTGTGGACGGTGCTGATGAA
GCTGCTCGGCACCGTGTCGGTCGTCGTCGCGGTGCTCGCGGCGGCCGATTACAAGATCGCACGCGTGATGTTCGTTCGCG
AGAACCGGATGACGAAGGAGGAAGTCAAGCGCGAGCACAAGGAGAGCGACGGCGATCCGCACACGAAGGGCGAGCGCCGC
CGGCTCGCGCGCGAGATCGCGACGAGCGCGCCGCCGCGGCAGCGGGTCGGCCAGGCGAACGTGCTCGTCGTCAACCCGAC
GCACTACGCGGTCGCGATCCGCTATGCGCCCGACGAGCATCCGCTGCCGCGGGTCATCGAGAAGGCCGTCGACGACGGCG
CGCTCGCGCTGCGCCGCCACGCGCACGCGCTCGGCGTGCCGATCGTCGGCAATCCGAGCGTCGCGCGCGCGCTGTACCGC
GTCGAGCGCGACGCGTCGATTCCCGAAGAGCTGTTCGAGACGGTGGCCGCGATCCTGCGCTGGGTCGAGTCCCTCTCGGC
CGCGCGCGCGGTCGCCGCCGTTTCCTCCGCGAGGTCGTCATGA

Upstream 100 bases:

>100_bases
CGCTTCGCATCCGGCGGCGCGGCTTCGGCTCGGCGCGCGCGCGGCGCGCGGCGCGCCGCTAACGTACGCGGCATCTCCGA
CTCCCGAAGGAACCGCGGCG

Downstream 100 bases:

>100_bases
CGCTGAAATCCCTCAAACTTCCCGCCGGCGGCGAGGTCGGCATCACGGTGCTCGTCGTCGCGATCGTCTCGCTGATGATC
CTGCCGCTGCCGCCCGAGGT

Product: type III secretion system protein HrcU

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 360; Mature: 359

Protein sequence:

>360_residues
MAEEKTEEPTEKKLKKVREKGQVAKSKDIADAMTLAAAIGVLTACESMLTGGLSRAVRTALDFVRGERTPQATLAALHDL
AASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKRIFSLKSLLELVKMIVKALVLACVAWKMMT
SLFPLVVASVYEATPQLARVLWTVLMKLLGTVSVVVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERR
RLAREIATSAPPRQRVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGNPSVARALYR
VERDASIPEELFETVAAILRWVESLSAARAVAAVSSARSS

Sequences:

>Translated_360_residues
MAEEKTEEPTEKKLKKVREKGQVAKSKDIADAMTLAAAIGVLTACESMLTGGLSRAVRTALDFVRGERTPQATLAALHDL
AASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKRIFSLKSLLELVKMIVKALVLACVAWKMMT
SLFPLVVASVYEATPQLARVLWTVLMKLLGTVSVVVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERR
RLAREIATSAPPRQRVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGNPSVARALYR
VERDASIPEELFETVAAILRWVESLSAARAVAAVSSARSS
>Mature_359_residues
AEEKTEEPTEKKLKKVREKGQVAKSKDIADAMTLAAAIGVLTACESMLTGGLSRAVRTALDFVRGERTPQATLAALHDLA
ASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKRIFSLKSLLELVKMIVKALVLACVAWKMMTS
LFPLVVASVYEATPQLARVLWTVLMKLLGTVSVVVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRR
LAREIATSAPPRQRVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGNPSVARALYRV
ERDASIPEELFETVAAILRWVESLSAARAVAAVSSARSS

Specific function: Involved in the secretion of popA, a proteinaceous elicitor of the hypersensitivity response in plants [H]

COG id: COG1377

COG function: function code NU; Flagellar biosynthesis pathway, component FlhB

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the type III secretion exporter family [H]

Homologues:

Organism=Escherichia coli, GI1788188, Length=361, Percent_Identity=30.1939058171745, Blast_Score=154, Evalue=1e-38,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006135
- InterPro:   IPR006307 [H]

Pfam domain/function: PF01312 Bac_export_2 [H]

EC number: NA

Molecular weight: Translated: 38915; Mature: 38784

Theoretical pI: Translated: 10.28; Mature: 10.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEEKTEEPTEKKLKKVREKGQVAKSKDIADAMTLAAAIGVLTACESMLTGGLSRAVRTA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LDFVRGERTPQATLAALHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKF
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCH
DAINPMAGIKRIFSLKSLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQLARV
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
LWTVLMKLLGTVSVVVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERR
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHH
RLAREIATSAPPRQRVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRH
HHHHHHHHCCCCHHHCCCCCEEEECCCCEEEEEEECCCCCCHHHHHHHHHCCHHHHHHHH
AHALGVPIVGNPSVARALYRVERDASIPEELFETVAAILRWVESLSAARAVAAVSSARSS
HHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AEEKTEEPTEKKLKKVREKGQVAKSKDIADAMTLAAAIGVLTACESMLTGGLSRAVRTA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LDFVRGERTPQATLAALHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKF
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCH
DAINPMAGIKRIFSLKSLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQLARV
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
LWTVLMKLLGTVSVVVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERR
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHH
RLAREIATSAPPRQRVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRH
HHHHHHHHCCCCHHHCCCCCEEEECCCCEEEEEEECCCCCCHHHHHHHHHCCHHHHHHHH
AHALGVPIVGNPSVARALYRVERDASIPEELFETVAAILRWVESLSAARAVAAVSSARSS
HHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8316211; 11823852 [H]