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The map label for this gene is yscS [H]

Identifier: 53722639

GI number: 53722639

Start: 2191452

End: 2191715

Strand: Reverse

Name: yscS [H]

Synonym: BPSS1616

Alternate gene names: 53722639

Gene position: 2191715-2191452 (Counterclockwise)

Preceding gene: 53722640

Following gene: 53722638

Centisome position: 69.07

GC content: 66.29

Gene sequence:

>264_bases
ATGGAAATCGACGACCTGATCCGGCTCACGTCGCAAGGCATGATGCTGTGTCTCTACATCTCGCTGCCGGTCGTGCTCGT
CGCGGCCGCCTCCGGCCTGGCGATCTCGTTCCTGCAGGCGATCACGTCGCTGCAGGAGCAGAGCATCTCGTACGGCGTGA
AGCTCGTCGCGGTGACGGTGACCGTCGCGATCGCCGGGCCGTGGGCGGCCGCCGAGATCCTGCATTTCGCGCAGCAACTG
ATGTCCGCGGCGGTGCCGTCGTGA

Upstream 100 bases:

>100_bases
TTCGTCGTGATGGACGGCTGGTCGACGCTCGTGCACGGCCTCGTGCTGACCTATTCCTGATGCCCGCTGACCGATTCCCG
ACTTCGAGGAGGCTCGCCCG

Downstream 100 bases:

>100_bases
GCCGCATCACGCGCGCGATCGCGCAGCCTCTTCACGCGGCGAAGCCCGATACCCGGCGGCGCCGGCCGGTGCGCGCGCGC
ACCGCGACGACCTATGGCAA

Product: type III secretion protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 87; Mature: 87

Protein sequence:

>87_residues
MEIDDLIRLTSQGMMLCLYISLPVVLVAAASGLAISFLQAITSLQEQSISYGVKLVAVTVTVAIAGPWAAAEILHFAQQL
MSAAVPS

Sequences:

>Translated_87_residues
MEIDDLIRLTSQGMMLCLYISLPVVLVAAASGLAISFLQAITSLQEQSISYGVKLVAVTVTVAIAGPWAAAEILHFAQQL
MSAAVPS
>Mature_87_residues
MEIDDLIRLTSQGMMLCLYISLPVVLVAAASGLAISFLQAITSLQEQSISYGVKLVAVTVTVAIAGPWAAAEILHFAQQL
MSAAVPS

Specific function: Component of the Yop secretion machinery [H]

COG id: COG4794

COG function: function code U; Type III secretory pathway, component EscS

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliQ/MopD/SpaQ family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002191
- InterPro:   IPR006306 [H]

Pfam domain/function: PF01313 Bac_export_3 [H]

EC number: NA

Molecular weight: Translated: 9119; Mature: 9119

Theoretical pI: Translated: 4.26; Mature: 4.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIDDLIRLTSQGMMLCLYISLPVVLVAAASGLAISFLQAITSLQEQSISYGVKLVAVTV
CCHHHHHHHHHCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TVAIAGPWAAAEILHFAQQLMSAAVPS
HHHHCCCHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MEIDDLIRLTSQGMMLCLYISLPVVLVAAASGLAISFLQAITSLQEQSISYGVKLVAVTV
CCHHHHHHHHHCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TVAIAGPWAAAEILHFAQQLMSAAVPS
HHHHCCCHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8300512; 9746557; 9748454; 11586360 [H]