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The map label for this gene is intF [H]

Identifier: 52841319

GI number: 52841319

Start: 1180278

End: 1181522

Strand: Reverse

Name: intF [H]

Synonym: lpg1085

Alternate gene names: 52841319

Gene position: 1181522-1180278 (Counterclockwise)

Preceding gene: 52841336

Following gene: 52841318

Centisome position: 34.77

GC content: 38.47

Gene sequence:

>1245_bases
ATGAAAATAAACAAAACAAACGTAGAAAACCTCCCTCTTCCTCAAGCAATGGAAGCAGGTAAAACTGCACAGAAGAGATA
TTATGATGACAACCTAAAAGGCTTTGGCATCCGTGTAACTTCTGGAGGAGCAAAAGCCTTTTTTGTTGAAAAATTCATAA
ATAAAAAACGCTGTCGCATTACTTTAGGACATTACCCAGAATTAACTGCTGAAATGGCAAAAAACAAAGCGCTACACCTT
TTAGGTCAAATCGCTATGGGTATTGACCCCATTGCTGAGAAAAAGGCGACAGAGGTTCGAGATATTACTTTAAATCAAGT
TTTTAAAGACTATCTAAGAACCAGAAAAAACTTAAAGCCTAGAACTATAGATAATTACACACACATATTAGATAAAGCAT
TCACCCATTGGAAAAGCAAACCGATGTTATCTATCACTAGAGATCGCATCGCCAAATACCACGAAAAGCTAGGTAATGAA
CATGGAGAAGCCTATGCTAATTTAGCTATGCGGATCCTACGAGCCTTATTCAATTTTGCAGCAGGCCAATATGAAGATAA
CAGCGGCCATTCCCTTTTCATTGATAACCCAGTAAAACGCCTCTCGCAAACTCGCGCCTGGTACCGCATTGAAAAACGAA
AAACCTATATAAAATCTCACGAGCTAGCTGCCTGGTATACTAGTTTGCAAGAGATCCAAAATGTAACATTACGTGATTAC
CTGTTATTAATCTTATTAACTGGTTTACGCAGGCAAGAAGCAGCCACCTTAAAGTGGTCTGATCTCGACTTAAAGGCCAA
GACATTCACTATCAATACAACCAAAAACAATGAATCCCATACTCTTCCGCTTTCAGACTTTCTTTATGATTTGTTGATTG
CCAGAAAAGAGAAGGCCATTAACGACTATATCTTTCCCGGCTCGGGTACAGCAGGCCATATTATCGAACCTAGAAAGACA
ATGGCACATGTGATAAAAAATTCCGGTGTTCATTTCACAGTCCATGACTTGAGACGAACATTTATCACTATTGCCGAAAG
TCTCGATATTCCAGCCTATGCTTTAAAACGTTTAATGAACCATAAAATGAGTAGTGATGTAACTGCCGGATACATCATTG
TTGATGTAGAACGACTTCGAAAACCTATGCAGCTTATTACAGATTATATTTTAAAATGTGTGGGTGTAGTAAAATCCGCT
GACATCATTCCTATCCAACCCGAAAAAACGGAGCTTTTGAAATGA

Upstream 100 bases:

>100_bases
CATTATTACGTTATAAGTTCTATTAATTGATTTTAAATAATTGTGCGACACAAGTGCGACACTCTTGCGACACATTAAAA
AGTAAGGGTAAAAATTAATT

Downstream 100 bases:

>100_bases
ATATGCCTGAACTACCCGAATTGCTTACAGCTATACGTTCAATACTAAATCAAGCACGAACCCAGCTACAGCAAACAGTT
AATCATACTATGGTACAGGC

Product: phage related integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 414; Mature: 414

Protein sequence:

>414_residues
MKINKTNVENLPLPQAMEAGKTAQKRYYDDNLKGFGIRVTSGGAKAFFVEKFINKKRCRITLGHYPELTAEMAKNKALHL
LGQIAMGIDPIAEKKATEVRDITLNQVFKDYLRTRKNLKPRTIDNYTHILDKAFTHWKSKPMLSITRDRIAKYHEKLGNE
HGEAYANLAMRILRALFNFAAGQYEDNSGHSLFIDNPVKRLSQTRAWYRIEKRKTYIKSHELAAWYTSLQEIQNVTLRDY
LLLILLTGLRRQEAATLKWSDLDLKAKTFTINTTKNNESHTLPLSDFLYDLLIARKEKAINDYIFPGSGTAGHIIEPRKT
MAHVIKNSGVHFTVHDLRRTFITIAESLDIPAYALKRLMNHKMSSDVTAGYIIVDVERLRKPMQLITDYILKCVGVVKSA
DIIPIQPEKTELLK

Sequences:

>Translated_414_residues
MKINKTNVENLPLPQAMEAGKTAQKRYYDDNLKGFGIRVTSGGAKAFFVEKFINKKRCRITLGHYPELTAEMAKNKALHL
LGQIAMGIDPIAEKKATEVRDITLNQVFKDYLRTRKNLKPRTIDNYTHILDKAFTHWKSKPMLSITRDRIAKYHEKLGNE
HGEAYANLAMRILRALFNFAAGQYEDNSGHSLFIDNPVKRLSQTRAWYRIEKRKTYIKSHELAAWYTSLQEIQNVTLRDY
LLLILLTGLRRQEAATLKWSDLDLKAKTFTINTTKNNESHTLPLSDFLYDLLIARKEKAINDYIFPGSGTAGHIIEPRKT
MAHVIKNSGVHFTVHDLRRTFITIAESLDIPAYALKRLMNHKMSSDVTAGYIIVDVERLRKPMQLITDYILKCVGVVKSA
DIIPIQPEKTELLK
>Mature_414_residues
MKINKTNVENLPLPQAMEAGKTAQKRYYDDNLKGFGIRVTSGGAKAFFVEKFINKKRCRITLGHYPELTAEMAKNKALHL
LGQIAMGIDPIAEKKATEVRDITLNQVFKDYLRTRKNLKPRTIDNYTHILDKAFTHWKSKPMLSITRDRIAKYHEKLGNE
HGEAYANLAMRILRALFNFAAGQYEDNSGHSLFIDNPVKRLSQTRAWYRIEKRKTYIKSHELAAWYTSLQEIQNVTLRDY
LLLILLTGLRRQEAATLKWSDLDLKAKTFTINTTKNNESHTLPLSDFLYDLLIARKEKAINDYIFPGSGTAGHIIEPRKT
MAHVIKNSGVHFTVHDLRRTFITIAESLDIPAYALKRLMNHKMSSDVTAGYIIVDVERLRKPMQLITDYILKCVGVVKSA
DIIPIQPEKTELLK

Specific function: Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI2367104, Length=412, Percent_Identity=25.4854368932039, Blast_Score=119, Evalue=3e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 47516; Mature: 47516

Theoretical pI: Translated: 10.26; Mature: 10.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKINKTNVENLPLPQAMEAGKTAQKRYYDDNLKGFGIRVTSGGAKAFFVEKFINKKRCRI
CCCCCCCCCCCCCCHHHHHCCHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEE
TLGHYPELTAEMAKNKALHLLGQIAMGIDPIAEKKATEVRDITLNQVFKDYLRTRKNLKP
EECCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
RTIDNYTHILDKAFTHWKSKPMLSITRDRIAKYHEKLGNEHGEAYANLAMRILRALFNFA
CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
AGQYEDNSGHSLFIDNPVKRLSQTRAWYRIEKRKTYIKSHELAAWYTSLQEIQNVTLRDY
CCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
LLLILLTGLRRQEAATLKWSDLDLKAKTFTINTTKNNESHTLPLSDFLYDLLIARKEKAI
HHHHHHHCCCHHHCCEEEECCCCEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH
NDYIFPGSGTAGHIIEPRKTMAHVIKNSGVHFTVHDLRRTFITIAESLDIPAYALKRLMN
HCEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHCCCCHHHHHHHHH
HKMSSDVTAGYIIVDVERLRKPMQLITDYILKCVGVVKSADIIPIQPEKTELLK
HHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHCC
>Mature Secondary Structure
MKINKTNVENLPLPQAMEAGKTAQKRYYDDNLKGFGIRVTSGGAKAFFVEKFINKKRCRI
CCCCCCCCCCCCCCHHHHHCCHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEE
TLGHYPELTAEMAKNKALHLLGQIAMGIDPIAEKKATEVRDITLNQVFKDYLRTRKNLKP
EECCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
RTIDNYTHILDKAFTHWKSKPMLSITRDRIAKYHEKLGNEHGEAYANLAMRILRALFNFA
CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
AGQYEDNSGHSLFIDNPVKRLSQTRAWYRIEKRKTYIKSHELAAWYTSLQEIQNVTLRDY
CCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
LLLILLTGLRRQEAATLKWSDLDLKAKTFTINTTKNNESHTLPLSDFLYDLLIARKEKAI
HHHHHHHCCCHHHCCEEEECCCCEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH
NDYIFPGSGTAGHIIEPRKTMAHVIKNSGVHFTVHDLRRTFITIAESLDIPAYALKRLMN
HCEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHCCCCHHHHHHHHH
HKMSSDVTAGYIIVDVERLRKPMQLITDYILKCVGVVKSADIIPIQPEKTELLK
HHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]