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The map label for this gene is ykfC [H]

Identifier: 52841315

GI number: 52841315

Start: 1176202

End: 1177704

Strand: Reverse

Name: ykfC [H]

Synonym: lpg1081

Alternate gene names: 52841315

Gene position: 1177704-1176202 (Counterclockwise)

Preceding gene: 52841318

Following gene: 52841314

Centisome position: 34.66

GC content: 41.25

Gene sequence:

>1503_bases
ATGCAAATGACTACATCACAAACTAACGATGCGGATGCGGCTCCTACTACTATCAAATGGCAAACCATTAACTGGTTAGC
ATGTCATGAAGAAGTTAAGAAACTGCAACGACGTATCGCAAAGGCAACACGAGAGAAACGCTGGCGTAAAGTGAACTCAT
TACAATGGCTACTCACTCATTCCTTCTCGGCCAAAGCAATTGCCGTAAAGCGAGTTACAGAAAATAAAGGCAAAAGAACG
GCCGGTGTTGATGGGAAAATATGGTCAACACCTGAAGCAAAATCAAAAGCCATCACTCAACTTAAACGGCGGGGATATAA
ACCCTACCCTTTAAAGCGAGTGTATATCCCAAAATCAAATAACACTAAAAGACCACTTGGCATCCCGGTTATGCGAGACA
GAGCGATGCAAGCTTTATACTTACTTGCACTAGAGCCTGTTTCAGAAACCACTGCTGATTGGAATTCTTATGGATTTCGC
CCACGGCGTTCTACTCATGACGCTATTAGCCATCTCTTTGTGATGCTTGCTCGCAAAGGTGCCGCACAATGGGTACTAGA
AGGCGACATCAAAGGGTGTTTTGATACAATCAGCCACGAGTGGATTCTTAATAACGTGATGTTAGATAAGAGAATGCTCC
AGCACTGGTTAAAAGCGGGATATATTGATAAAGGTCACTTGTTTCCTACCCAGGAAGGCACGCCACAAGGAGGTATTATC
TCTCCAACGTTGGCAAATTTGGTATTGGATGGTTTAGAGACGTTGCTTGCAACGAAATTTGGATCATTAAAACACGATGG
ACACGCTAGCCGTACCAGTAAATACCAAGTGCATTTCGTGAGATATGCTGATGATTTTGTCATCACAGGAAAATCAAAAA
CTCTTCTTGAAGACGAAGTCAAACCGCTAATAAAGGATTTTCTAGCACAACGAGGTCTAAAGCTTTCTGAGCAAAAGACT
AAAGTGACGCATATCACACACGGGTTCGATTTTCTTGGTCAAAATATACGGAAATATAGATTGGGAAAAGCCAACGAAAA
ACTATTGATAAAACCATCAGCGAACAATGTTAAGGCACTTAAGCTGAAAGTGAAAACGATGATAACAAAACTTTGTACTG
CCAAACAAGAAGAAGTAATAGGCGTACTTAATCCTATAATCCGAGGTTGGGCAAATTATCATCATCACATAGTGGCTAAA
GAAACATTTACAAAAGTAGACCACTTTATCTGGCGATCATTAAGGTGCTGGGCATGCAGGCGACATCCTAACAAAAACTT
AAGATGGGTTAAGCAACGGTATTACCTAGCAATAGAAAACCGTCGCAACATGACCTTCGCCTGTAGGAGCAATGAAACTG
GGAAAAAAGCAAAGCTGTTAACTCTTTGCCATGCAGCGGATACTAAAATTATTCGCCATAATAAAATAGTTGGAGCTGCT
AATCCCTACCATCCCCAATATGATGATTACTTTAAAAAACGTTCTTGCGAAAGATACCTGTAG

Upstream 100 bases:

>100_bases
GTAATGGAAAAGATAGGAACGACTGTTCTATGGTGAAAGCCAGCCCACTTGGTCTTGGTCAACATTGCGAGAGACTAGCA
GAATTTCTTTTTAAGGAGAC

Downstream 100 bases:

>100_bases
TGTTACCGGCTGATCCTATGGGATTGGCTTAGAAAAGAAACAGACATCTTCTGTTTCCTTGATTGAAGCCGTATGCGATG
AAAGTCGCACGTACGGTTTT

Product: reverse transcriptase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 500; Mature: 500

Protein sequence:

>500_residues
MQMTTSQTNDADAAPTTIKWQTINWLACHEEVKKLQRRIAKATREKRWRKVNSLQWLLTHSFSAKAIAVKRVTENKGKRT
AGVDGKIWSTPEAKSKAITQLKRRGYKPYPLKRVYIPKSNNTKRPLGIPVMRDRAMQALYLLALEPVSETTADWNSYGFR
PRRSTHDAISHLFVMLARKGAAQWVLEGDIKGCFDTISHEWILNNVMLDKRMLQHWLKAGYIDKGHLFPTQEGTPQGGII
SPTLANLVLDGLETLLATKFGSLKHDGHASRTSKYQVHFVRYADDFVITGKSKTLLEDEVKPLIKDFLAQRGLKLSEQKT
KVTHITHGFDFLGQNIRKYRLGKANEKLLIKPSANNVKALKLKVKTMITKLCTAKQEEVIGVLNPIIRGWANYHHHIVAK
ETFTKVDHFIWRSLRCWACRRHPNKNLRWVKQRYYLAIENRRNMTFACRSNETGKKAKLLTLCHAADTKIIRHNKIVGAA
NPYHPQYDDYFKKRSCERYL

Sequences:

>Translated_500_residues
MQMTTSQTNDADAAPTTIKWQTINWLACHEEVKKLQRRIAKATREKRWRKVNSLQWLLTHSFSAKAIAVKRVTENKGKRT
AGVDGKIWSTPEAKSKAITQLKRRGYKPYPLKRVYIPKSNNTKRPLGIPVMRDRAMQALYLLALEPVSETTADWNSYGFR
PRRSTHDAISHLFVMLARKGAAQWVLEGDIKGCFDTISHEWILNNVMLDKRMLQHWLKAGYIDKGHLFPTQEGTPQGGII
SPTLANLVLDGLETLLATKFGSLKHDGHASRTSKYQVHFVRYADDFVITGKSKTLLEDEVKPLIKDFLAQRGLKLSEQKT
KVTHITHGFDFLGQNIRKYRLGKANEKLLIKPSANNVKALKLKVKTMITKLCTAKQEEVIGVLNPIIRGWANYHHHIVAK
ETFTKVDHFIWRSLRCWACRRHPNKNLRWVKQRYYLAIENRRNMTFACRSNETGKKAKLLTLCHAADTKIIRHNKIVGAA
NPYHPQYDDYFKKRSCERYL
>Mature_500_residues
MQMTTSQTNDADAAPTTIKWQTINWLACHEEVKKLQRRIAKATREKRWRKVNSLQWLLTHSFSAKAIAVKRVTENKGKRT
AGVDGKIWSTPEAKSKAITQLKRRGYKPYPLKRVYIPKSNNTKRPLGIPVMRDRAMQALYLLALEPVSETTADWNSYGFR
PRRSTHDAISHLFVMLARKGAAQWVLEGDIKGCFDTISHEWILNNVMLDKRMLQHWLKAGYIDKGHLFPTQEGTPQGGII
SPTLANLVLDGLETLLATKFGSLKHDGHASRTSKYQVHFVRYADDFVITGKSKTLLEDEVKPLIKDFLAQRGLKLSEQKT
KVTHITHGFDFLGQNIRKYRLGKANEKLLIKPSANNVKALKLKVKTMITKLCTAKQEEVIGVLNPIIRGWANYHHHIVAK
ETFTKVDHFIWRSLRCWACRRHPNKNLRWVKQRYYLAIENRRNMTFACRSNETGKKAKLLTLCHAADTKIIRHNKIVGAA
NPYHPQYDDYFKKRSCERYL

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6226521, Length=348, Percent_Identity=28.448275862069, Blast_Score=112, Evalue=2e-25,
Organism=Saccharomyces cerevisiae, GI6226520, Length=288, Percent_Identity=28.4722222222222, Blast_Score=98, Evalue=3e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 57646; Mature: 57646

Theoretical pI: Translated: 10.75; Mature: 10.75

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQMTTSQTNDADAAPTTIKWQTINWLACHEEVKKLQRRIAKATREKRWRKVNSLQWLLTH
CCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHC
SFSAKAIAVKRVTENKGKRTAGVDGKIWSTPEAKSKAITQLKRRGYKPYPLKRVYIPKSN
CCCCCEEEEEEHHCCCCCEECCCCCCEECCCCHHHHHHHHHHHCCCCCCCCEEEEECCCC
NTKRPLGIPVMRDRAMQALYLLALEPVSETTADWNSYGFRPRRSTHDAISHLFVMLARKG
CCCCCCCCCHHHHHHHHHHHHHHCCCCHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHCC
AAQWVLEGDIKGCFDTISHEWILNNVMLDKRMLQHWLKAGYIDKGHLFPTQEGTPQGGII
CCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
SPTLANLVLDGLETLLATKFGSLKHDGHASRTSKYQVHFVRYADDFVITGKSKTLLEDEV
CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEECCEEEECCCCHHHHHHH
KPLIKDFLAQRGLKLSEQKTKVTHITHGFDFLGQNIRKYRLGKANEKLLIKPSANNVKAL
HHHHHHHHHHCCCCCCCHHHHHEEEECCHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEE
KLKVKTMITKLCTAKQEEVIGVLNPIIRGWANYHHHIVAKETFTKVDHFIWRSLRCWACR
EHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCEEEEEHHHHHHHHHHHHHHHHHHHHH
RHPNKNLRWVKQRYYLAIENRRNMTFACRSNETGKKAKLLTLCHAADTKIIRHNKIVGAA
CCCCCCHHHHHHEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHCCCCEEECCCEEECC
NPYHPQYDDYFKKRSCERYL
CCCCCCHHHHHHHHHHCCCC
>Mature Secondary Structure
MQMTTSQTNDADAAPTTIKWQTINWLACHEEVKKLQRRIAKATREKRWRKVNSLQWLLTH
CCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHC
SFSAKAIAVKRVTENKGKRTAGVDGKIWSTPEAKSKAITQLKRRGYKPYPLKRVYIPKSN
CCCCCEEEEEEHHCCCCCEECCCCCCEECCCCHHHHHHHHHHHCCCCCCCCEEEEECCCC
NTKRPLGIPVMRDRAMQALYLLALEPVSETTADWNSYGFRPRRSTHDAISHLFVMLARKG
CCCCCCCCCHHHHHHHHHHHHHHCCCCHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHCC
AAQWVLEGDIKGCFDTISHEWILNNVMLDKRMLQHWLKAGYIDKGHLFPTQEGTPQGGII
CCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
SPTLANLVLDGLETLLATKFGSLKHDGHASRTSKYQVHFVRYADDFVITGKSKTLLEDEV
CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEECCEEEECCCCHHHHHHH
KPLIKDFLAQRGLKLSEQKTKVTHITHGFDFLGQNIRKYRLGKANEKLLIKPSANNVKAL
HHHHHHHHHHCCCCCCCHHHHHEEEECCHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEE
KLKVKTMITKLCTAKQEEVIGVLNPIIRGWANYHHHIVAKETFTKVDHFIWRSLRCWACR
EHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCEEEEEHHHHHHHHHHHHHHHHHHHHH
RHPNKNLRWVKQRYYLAIENRRNMTFACRSNETGKKAKLLTLCHAADTKIIRHNKIVGAA
CCCCCCHHHHHHEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHCCCCEEECCCEEECC
NPYHPQYDDYFKKRSCERYL
CCCCCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]