Click here to switch to the map view.

The map label for this gene is capB [H]

Identifier: 52841294

GI number: 52841294

Start: 1158966

End: 1159229

Strand: Reverse

Name: capB [H]

Synonym: lpg1060

Alternate gene names: 52841294

Gene position: 1159229-1158966 (Counterclockwise)

Preceding gene: 52841295

Following gene: 52841293

Centisome position: 34.12

GC content: 37.5

Gene sequence:

>264_bases
ATGACACTATGTAACCTGCTTGATTATAAGGAAATAAACAAAATGACTAATAAAATTCGTGGTAAAGTCAAATGGTTTAA
TAAAGACAAGGGATTTGGTTTTATTGAAAGCAGTGGCAAGGATTACTTTGTCCACTTTAGCTCGATTCAAAGTAACGGCT
TTAAAACGCTTCCCGATGGGGCAACCGTTCTTTTTAAAATGGGAAAAGGACAGAAAGGACCTCAGGCCGAGGAAGTAGAG
GTTATCAAAAATGACCACCATTAG

Upstream 100 bases:

>100_bases
GAAAAAAACAAAGGGAAACACTGGAGAGTCCACTGATTCAATCCATTAAATCACTAAGAGCTCTCTGGTTAACAAGTATT
GACAAAAAGAACAACGTGGC

Downstream 100 bases:

>100_bases
GTCTAGGCAAGACCGTTCTGATGAACAATAACACTTATTTTTACTGCATGAAACCATCAAGGAGGAAAGAAGTGGACCAA
CGAGTTGCTTTAGTCACAGG

Product: cold shock domain-contain protein

Products: NA

Alternate protein names: C8.0; Cold acclimation protein B [H]

Number of amino acids: Translated: 87; Mature: 86

Protein sequence:

>87_residues
MTLCNLLDYKEINKMTNKIRGKVKWFNKDKGFGFIESSGKDYFVHFSSIQSNGFKTLPDGATVLFKMGKGQKGPQAEEVE
VIKNDHH

Sequences:

>Translated_87_residues
MTLCNLLDYKEINKMTNKIRGKVKWFNKDKGFGFIESSGKDYFVHFSSIQSNGFKTLPDGATVLFKMGKGQKGPQAEEVE
VIKNDHH
>Mature_86_residues
TLCNLLDYKEINKMTNKIRGKVKWFNKDKGFGFIESSGKDYFVHFSSIQSNGFKTLPDGATVLFKMGKGQKGPQAEEVEV
IKNDHH

Specific function: Affects cell viability at low temperatures [H]

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1788126, Length=67, Percent_Identity=59.7014925373134, Blast_Score=79, Evalue=7e-17,
Organism=Escherichia coli, GI1786841, Length=65, Percent_Identity=60, Blast_Score=78, Evalue=1e-16,
Organism=Escherichia coli, GI2367114, Length=67, Percent_Identity=55.2238805970149, Blast_Score=75, Evalue=6e-16,
Organism=Escherichia coli, GI1787839, Length=69, Percent_Identity=52.1739130434783, Blast_Score=72, Evalue=5e-15,
Organism=Escherichia coli, GI1787834, Length=67, Percent_Identity=56.7164179104478, Blast_Score=71, Evalue=1e-14,
Organism=Escherichia coli, GI1789979, Length=67, Percent_Identity=53.7313432835821, Blast_Score=71, Evalue=1e-14,
Organism=Escherichia coli, GI1787107, Length=62, Percent_Identity=48.3870967741936, Blast_Score=61, Evalue=1e-11,

Paralogues:

None

Copy number: 8300 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 9898; Mature: 9767

Theoretical pI: Translated: 9.87; Mature: 9.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLCNLLDYKEINKMTNKIRGKVKWFNKDKGFGFIESSGKDYFVHFSSIQSNGFKTLPDG
CCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCEEEECCCCEEEEEEECCCCCCCEECCCC
ATVLFKMGKGQKGPQAEEVEVIKNDHH
CEEEEECCCCCCCCCCCCCCEECCCCC
>Mature Secondary Structure 
TLCNLLDYKEINKMTNKIRGKVKWFNKDKGFGFIESSGKDYFVHFSSIQSNGFKTLPDG
CCCCCCCHHHHHHHHHHHCCEEEEEECCCCCEEEECCCCEEEEEEECCCCCCCEECCCC
ATVLFKMGKGQKGPQAEEVEVIKNDHH
CEEEEECCCCCCCCCCCCCCEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9393697 [H]