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The map label for this gene is 52788043

Identifier: 52788043

GI number: 52788043

Start: 4213939

End: 4214796

Strand: Reverse

Name: 52788043

Synonym: BLi04371

Alternate gene names: NA

Gene position: 4214796-4213939 (Counterclockwise)

Preceding gene: 52788044

Following gene: 52788042

Centisome position: 99.81

GC content: 43.01

Gene sequence:

>858_bases
ATGGAATATTATCGACAATATCATTCATTGCTTTTTTCGATTGCTTACCGTATGCTCGGGTCTTTTCAAGATGCAGAGGA
CATCATCCAAGAATTGTTCGCAGACCTTCAGGAAAAAGATATCGGTCAAATTGACCATATTCAAGCATATTTAACGAAAT
CAATCACAAACCGCTGCATAAATGAACTGCAGTCTGCCCGCAAGAAGCGGGAGGTATATATCGGGGAATGGCTTCCGGAA
CCGCAGGTGGCGCTTTCAGCTCAAATCCCGGCTGAGTACGTTGAAGAGAAAGAAAAGGTATCCTATGCTTTTCTGGTAGT
TATGAGCCGATTAAATCCTGTAGAAAGAGCCGTTTTGATGTTTAGAGAAGTATTTGGATATCATTACAAGGAAATTTCGT
CCATTATCGGGAAGTCGGAAGCGAACTGTCGTCAAATCCACAGCCGGCTGAAACAGAAATTAAACGAGGATATTTCGGTA
TTTTCACAGCCGGTTGAAGAACAGCAATTGGCCCAGCTGTTTATCGAATCAGCGAAAACAGGTAATTTTGAGGAGTTTTC
CAAGAAATTGATTGAAGATGCCGTATTGTATACAGATGGCGGCGGAAAAGTGCGCAGCGCTTTGAGACCGATCTATGGAA
AGAGCCGCATTTATGCGTTTTTTACGGGAGTTGTTTCAAAGGGAAGCTTTTCCGGCCGCTTTATGCCAGTCGATATCAAC
GACCAAAAGGGCGTTTTGATCATGAAAAACAACCGCCCGGCTTACGCGGTTTGCTTTGCTTGGAATCCGGAAGGCGATTC
CGTCAAAAATGTGTTTATCGTGTCAAATCCCGATAAACTGAAGCACATTAAAATATAA

Upstream 100 bases:

>100_bases
GAATTTGAAGAATATATTCAGTTTACGATTCGAATACCGAAATAAAAGCTCCCTATAGAGCTTTTATTTTTTTAGGCAAA
ATATCTATGGGGGAGCGTCT

Downstream 100 bases:

>100_bases
CGTTTTTTGTCACAAACTCCGTTTCTCTCTTGTTATATAAGTGAAACACTTAAAGGAGGAATAGACATGGAAACGAGATT
TCTAATGGAAAAAGTAAATC

Product: hypothetical protein

Products: NA

Alternate protein names: ECF Subfamily RNA Polymerase Sigma-24 Subunit; ECF Subfamily RNA Polymerase Sigma-24 Factor; Sigma Factor; RNA Polymerase Sigma Factor SigJ; RNA Polymerase ECF-Subfamily Sigma Factor; Sigma-; ECF Subfamily RNA Polymerase Sigma Factor; RNA Polymerase Sigma-70 Factor ECF Subfamily; ECF-Sigma Factor; RNA Polymerase Sigma Factor; RNA Polymerase Sigma-70 Factor; ECF Family RNA Polymerase Sigma Factor; Sigma-70 Region 2 Domain-Containing Protein; RNA Polymerase Sigma Factor Sigma-70 Family; ECF Sigma Factor; Sigma Factor Sigma; RNA Polymerase Sigma Factor Sigma-70 Family Protein; RNA Polymerase; RNA Polymerase ECF-Type Sigma Factor; ECF-Family Protein RNA Polymerase Sigma Factor; Sigma-70 Family RNA Polymerase Sigma Factor; Sigma-70 Factor; DNA-Directed RNA Polymeracialized Sigma Subunit; RNA Polymerase Sigma Subunit; AlteRNAtive RNA Polymerase Sigma Factor; RNA Polymerase Sigma-24 Factor Protein; RNA Polymerase Sigma Subunit ECF Family; RNA Polymerase Sigma-24 Subunit; RNA Polymerase Sigma-70 Factor Family; RNA Polymerase Sigma-70-Like Factor; ECF-Type Sigma Factor; RNA Polymerase Sigma-70 ECF Type; ECF Subfamily RNA Polymerase Sigma-; RNA Polymerase Sigma-70 Factor Protein

Number of amino acids: Translated: 285; Mature: 285

Protein sequence:

>285_residues
MEYYRQYHSLLFSIAYRMLGSFQDAEDIIQELFADLQEKDIGQIDHIQAYLTKSITNRCINELQSARKKREVYIGEWLPE
PQVALSAQIPAEYVEEKEKVSYAFLVVMSRLNPVERAVLMFREVFGYHYKEISSIIGKSEANCRQIHSRLKQKLNEDISV
FSQPVEEQQLAQLFIESAKTGNFEEFSKKLIEDAVLYTDGGGKVRSALRPIYGKSRIYAFFTGVVSKGSFSGRFMPVDIN
DQKGVLIMKNNRPAYAVCFAWNPEGDSVKNVFIVSNPDKLKHIKI

Sequences:

>Translated_285_residues
MEYYRQYHSLLFSIAYRMLGSFQDAEDIIQELFADLQEKDIGQIDHIQAYLTKSITNRCINELQSARKKREVYIGEWLPE
PQVALSAQIPAEYVEEKEKVSYAFLVVMSRLNPVERAVLMFREVFGYHYKEISSIIGKSEANCRQIHSRLKQKLNEDISV
FSQPVEEQQLAQLFIESAKTGNFEEFSKKLIEDAVLYTDGGGKVRSALRPIYGKSRIYAFFTGVVSKGSFSGRFMPVDIN
DQKGVLIMKNNRPAYAVCFAWNPEGDSVKNVFIVSNPDKLKHIKI
>Mature_285_residues
MEYYRQYHSLLFSIAYRMLGSFQDAEDIIQELFADLQEKDIGQIDHIQAYLTKSITNRCINELQSARKKREVYIGEWLPE
PQVALSAQIPAEYVEEKEKVSYAFLVVMSRLNPVERAVLMFREVFGYHYKEISSIIGKSEANCRQIHSRLKQKLNEDISV
FSQPVEEQQLAQLFIESAKTGNFEEFSKKLIEDAVLYTDGGGKVRSALRPIYGKSRIYAFFTGVVSKGSFSGRFMPVDIN
DQKGVLIMKNNRPAYAVCFAWNPEGDSVKNVFIVSNPDKLKHIKI

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32734; Mature: 32734

Theoretical pI: Translated: 8.04; Mature: 8.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEYYRQYHSLLFSIAYRMLGSFQDAEDIIQELFADLQEKDIGQIDHIQAYLTKSITNRCI
CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
NELQSARKKREVYIGEWLPEPQVALSAQIPAEYVEEKEKVSYAFLVVMSRLNPVERAVLM
HHHHHHHHHHCEEHHCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
FREVFGYHYKEISSIIGKSEANCRQIHSRLKQKLNEDISVFSQPVEEQQLAQLFIESAKT
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC
GNFEEFSKKLIEDAVLYTDGGGKVRSALRPIYGKSRIYAFFTGVVSKGSFSGRFMPVDIN
CCHHHHHHHHHHHHHEEECCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEEC
DQKGVLIMKNNRPAYAVCFAWNPEGDSVKNVFIVSNPDKLKHIKI
CCCCEEEEECCCCEEEEEEEECCCCCCCCEEEEEECCCCCCCCCC
>Mature Secondary Structure
MEYYRQYHSLLFSIAYRMLGSFQDAEDIIQELFADLQEKDIGQIDHIQAYLTKSITNRCI
CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
NELQSARKKREVYIGEWLPEPQVALSAQIPAEYVEEKEKVSYAFLVVMSRLNPVERAVLM
HHHHHHHHHHCEEHHCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
FREVFGYHYKEISSIIGKSEANCRQIHSRLKQKLNEDISVFSQPVEEQQLAQLFIESAKT
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC
GNFEEFSKKLIEDAVLYTDGGGKVRSALRPIYGKSRIYAFFTGVVSKGSFSGRFMPVDIN
CCHHHHHHHHHHHHHEEECCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEEC
DQKGVLIMKNNRPAYAVCFAWNPEGDSVKNVFIVSNPDKLKHIKI
CCCCEEEEECCCCEEEEEEEECCCCCCCCEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA