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The map label for this gene is ykoE [H]

Identifier: 52787881

GI number: 52787881

Start: 4035536

End: 4036135

Strand: Reverse

Name: ykoE [H]

Synonym: BLi04204

Alternate gene names: 52787881

Gene position: 4036135-4035536 (Counterclockwise)

Preceding gene: 52787882

Following gene: 52787880

Centisome position: 95.58

GC content: 52.17

Gene sequence:

>600_bases
ATGAATTGGAACATGAAAGAAGTCGTCATGACAGTCATCTTGTCTGTGGCATGCGGCGTCATTTATTTAGGGTGGTCTAC
CTTGTGGATCCCTGTTTCAGCTATCGTCGGGCCCGTCGGAGCGAACTTTATGTTCGGCATATGGGTGATCGCCAGCCCGA
TTGTCGCTTATATCATCCGTAAACCGGGTGCGGCGCTGATTGCCGAGACGGCAGCTGCGGCGGTCGAACTGCTGACCGGA
AGCCATTTTGGGCTTTCAGCATTATTAATCGGTGTGTTCCAGGGAGCCGGTGCGGAAATCGCGTTTGCGATCTTTCGCTA
TAAGCGCTATAACTTGTTTACCCTTATGCTTTCCGGTGCGCTAGCCGCGGTGGGGAGCGCGACATACAGCCTGATGGCAA
ACGGTTTTGCCTACTATACGACGCAAACGCTGATATTGACGCTTATCATCCAAATCATCAGCGGCATTGTACTCGGCGGC
TGGCTGGCAAAAGCCGTTGTCGAAGCGCTTGCGAAAACGGGAGTCCTGAACCAGTATGAGATCATGAAAGAACACCGGAA
GAAGGATGATGCCGATGCGTTCATTTCTCGGATGCAGTAA

Upstream 100 bases:

>100_bases
TGAAGGAGCTCTTTTTGCAAAGCTGTCAGCTTGAATACGGCTTTTGGGAGATGGCTTATACGGTTGAAGATTGGCCTGTG
GAAATGGGGGCGGTGAGACG

Downstream 100 bases:

>100_bases
CCTTTCCGTCCGTTTTTATCATCGTCCTGAAACAGTCTTGGACCGGGTCTCGCTGTCGATTGAGCAGGGAGAAAAAGTGC
TGATACTCGGGCCGAGCGGA

Product: YkoE

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 199; Mature: 199

Protein sequence:

>199_residues
MNWNMKEVVMTVILSVACGVIYLGWSTLWIPVSAIVGPVGANFMFGIWVIASPIVAYIIRKPGAALIAETAAAAVELLTG
SHFGLSALLIGVFQGAGAEIAFAIFRYKRYNLFTLMLSGALAAVGSATYSLMANGFAYYTTQTLILTLIIQIISGIVLGG
WLAKAVVEALAKTGVLNQYEIMKEHRKKDDADAFISRMQ

Sequences:

>Translated_199_residues
MNWNMKEVVMTVILSVACGVIYLGWSTLWIPVSAIVGPVGANFMFGIWVIASPIVAYIIRKPGAALIAETAAAAVELLTG
SHFGLSALLIGVFQGAGAEIAFAIFRYKRYNLFTLMLSGALAAVGSATYSLMANGFAYYTTQTLILTLIIQIISGIVLGG
WLAKAVVEALAKTGVLNQYEIMKEHRKKDDADAFISRMQ
>Mature_199_residues
MNWNMKEVVMTVILSVACGVIYLGWSTLWIPVSAIVGPVGANFMFGIWVIASPIVAYIIRKPGAALIAETAAAAVELLTG
SHFGLSALLIGVFQGAGAEIAFAIFRYKRYNLFTLMLSGALAAVGSATYSLMANGFAYYTTQTLILTLIIQIISGIVLGG
WLAKAVVEALAKTGVLNQYEIMKEHRKKDDADAFISRMQ

Specific function: Part of the ABC transporter complex ykoCDEF that could transport hydroxymethylpyrimidine (HMP) and/or thiamine. Could also transport other HMP-containing products. Probably responsible for the translocation of the substrate across the membrane (Probable)

COG id: COG4721

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017195 [H]

Pfam domain/function: PF09819 ABC_cobalt [H]

EC number: NA

Molecular weight: Translated: 21372; Mature: 21372

Theoretical pI: Translated: 9.29; Mature: 9.29

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNWNMKEVVMTVILSVACGVIYLGWSTLWIPVSAIVGPVGANFMFGIWVIASPIVAYIIR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
KPGAALIAETAAAAVELLTGSHFGLSALLIGVFQGAGAEIAFAIFRYKRYNLFTLMLSGA
CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
LAAVGSATYSLMANGFAYYTTQTLILTLIIQIISGIVLGGWLAKAVVEALAKTGVLNQYE
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
IMKEHRKKDDADAFISRMQ
HHHHHCCCCCHHHHHHHCC
>Mature Secondary Structure
MNWNMKEVVMTVILSVACGVIYLGWSTLWIPVSAIVGPVGANFMFGIWVIASPIVAYIIR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
KPGAALIAETAAAAVELLTGSHFGLSALLIGVFQGAGAEIAFAIFRYKRYNLFTLMLSGA
CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
LAAVGSATYSLMANGFAYYTTQTLILTLIIQIISGIVLGGWLAKAVVEALAKTGVLNQYE
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
IMKEHRKKDDADAFISRMQ
HHHHHCCCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]