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The map label for this gene is yhdW [H]

Identifier: 52787833

GI number: 52787833

Start: 3982776

End: 3983636

Strand: Reverse

Name: yhdW [H]

Synonym: BLi04156

Alternate gene names: 52787833

Gene position: 3983636-3982776 (Counterclockwise)

Preceding gene: 52787834

Following gene: 52787831

Centisome position: 94.34

GC content: 49.01

Gene sequence:

>861_bases
GTGTCAGCTTTATTCAAAAAATTGATGTTATCTTCATTGATCGGGGTTTCCATCGGGTCAGCGCTGTTTGCACCGAATGC
GGGTGCACAAGAGCCGGCGGTGAAGCCTAAAAAAGTGGATGTCATTGCACACAGAGGCGCTTCGGGATATGCGCCGGAAA
ACACGATGGCTGCTTTTGATAAAGCGCTTCAGATGAAAGCAGATTATATCGAGCTGGATGTTCAAATGTCCAAAGACGGG
GAGCTTGTCATCATTCACGATACGACCGTAAACCGTACGACAGATATTGACTCAGTGCTGCCGGTTGCCGTAAAGGATTT
GACGCTTGCCGAGCTGCGCAAGCTTGATGCCGGCAGCTTCTTCGGTCCGCAGTTCGCAGGAGAGCGCATTCCGACATTTG
AAGAAGTGCTTGACCGGTATAAAGGGAAGGTCGGAATGCTGATCGAATTGAAAGAGCCTGCACGCTATCCGGGAATCGAA
GGAAAAGTGTCAGCAGCATTGAAAGAGCGGAGAATGGATAAGCCTAAAAACGGAAAAATCATTGTACAATCGTTTGATTT
TAACTCTGTCTATAAAATTCATCAGCTGCTTCCATCGATGCCGACAGGTGTCTTGACGTCAAAAGCGGCGGACTTAACAG
ATGCAAAGCTTAAGGAATTTTCCGGCTATGCCAAATACGTGAACGCCAACTTGAAAAATGTGGCCGCTGATCCTACGCTT
GTGCCGAGAATTCATGCGCTCGGCATGAAGATTACGCCTTGGACCGTCCGCTCCCGCGATGAAGTGCCTCCGCTATTAAA
GGCCGGCGTGGACGGGATTGTGACAGACTTTCCCGACTATGTTCCGAAAAAAGTACGGTAG

Upstream 100 bases:

>100_bases
TTTATCAGGAAATTTATGAAAATTAAAGACTGCTGAAACATAATCTTAACAGTGCGAACCTATACTTTGGCAAGAGAAGA
GCAAAAGGGGAGTGGATGAT

Downstream 100 bases:

>100_bases
CCACAATAAGAAAGCCTGCAGCTCGCTCTGCAGGCTTTTTCATTCATCAATAAAACTGGGCTAGCAGCAGCAGCGTCAGC
GTAACGGTTATCGCTCCGCC

Product: hypothetical protein

Products: NA

Alternate protein names: Glycerophosphodiester phosphodiesterase [H]

Number of amino acids: Translated: 286; Mature: 285

Protein sequence:

>286_residues
MSALFKKLMLSSLIGVSIGSALFAPNAGAQEPAVKPKKVDVIAHRGASGYAPENTMAAFDKALQMKADYIELDVQMSKDG
ELVIIHDTTVNRTTDIDSVLPVAVKDLTLAELRKLDAGSFFGPQFAGERIPTFEEVLDRYKGKVGMLIELKEPARYPGIE
GKVSAALKERRMDKPKNGKIIVQSFDFNSVYKIHQLLPSMPTGVLTSKAADLTDAKLKEFSGYAKYVNANLKNVAADPTL
VPRIHALGMKITPWTVRSRDEVPPLLKAGVDGIVTDFPDYVPKKVR

Sequences:

>Translated_286_residues
MSALFKKLMLSSLIGVSIGSALFAPNAGAQEPAVKPKKVDVIAHRGASGYAPENTMAAFDKALQMKADYIELDVQMSKDG
ELVIIHDTTVNRTTDIDSVLPVAVKDLTLAELRKLDAGSFFGPQFAGERIPTFEEVLDRYKGKVGMLIELKEPARYPGIE
GKVSAALKERRMDKPKNGKIIVQSFDFNSVYKIHQLLPSMPTGVLTSKAADLTDAKLKEFSGYAKYVNANLKNVAADPTL
VPRIHALGMKITPWTVRSRDEVPPLLKAGVDGIVTDFPDYVPKKVR
>Mature_285_residues
SALFKKLMLSSLIGVSIGSALFAPNAGAQEPAVKPKKVDVIAHRGASGYAPENTMAAFDKALQMKADYIELDVQMSKDGE
LVIIHDTTVNRTTDIDSVLPVAVKDLTLAELRKLDAGSFFGPQFAGERIPTFEEVLDRYKGKVGMLIELKEPARYPGIEG
KVSAALKERRMDKPKNGKIIVQSFDFNSVYKIHQLLPSMPTGVLTSKAADLTDAKLKEFSGYAKYVNANLKNVAADPTLV
PRIHALGMKITPWTVRSRDEVPPLLKAGVDGIVTDFPDYVPKKVR

Specific function: Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to sn-glycerol 3-phosphate (G3P) and the corresponding alcohols [H]

COG id: COG0584

COG function: function code C; Glycerophosphoryl diester phosphodiesterase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GDPD domain [H]

Homologues:

Organism=Homo sapiens, GI7706617, Length=259, Percent_Identity=28.957528957529, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI284055242, Length=95, Percent_Identity=38.9473684210526, Blast_Score=75, Evalue=8e-14,
Organism=Homo sapiens, GI21361649, Length=95, Percent_Identity=38.9473684210526, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI284055245, Length=95, Percent_Identity=38.9473684210526, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI284055240, Length=95, Percent_Identity=38.9473684210526, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI189571657, Length=135, Percent_Identity=31.1111111111111, Blast_Score=72, Evalue=4e-13,
Organism=Escherichia coli, GI1789858, Length=247, Percent_Identity=29.5546558704453, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1788572, Length=352, Percent_Identity=26.9886363636364, Blast_Score=86, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17542344, Length=299, Percent_Identity=26.4214046822742, Blast_Score=74, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004129
- InterPro:   IPR017946 [H]

Pfam domain/function: PF03009 GDPD [H]

EC number: =3.1.4.46 [H]

Molecular weight: Translated: 31256; Mature: 31125

Theoretical pI: Translated: 9.78; Mature: 9.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSALFKKLMLSSLIGVSIGSALFAPNAGAQEPAVKPKKVDVIAHRGASGYAPENTMAAFD
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHH
KALQMKADYIELDVQMSKDGELVIIHDTTVNRTTDIDSVLPVAVKDLTLAELRKLDAGSF
HHHHHHCCEEEEEEEECCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
FGPQFAGERIPTFEEVLDRYKGKVGMLIELKEPARYPGIEGKVSAALKERRMDKPKNGKI
CCCCCCCCCCCCHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCEE
IVQSFDFNSVYKIHQLLPSMPTGVLTSKAADLTDAKLKEFSGYAKYVNANLKNVAADPTL
EEEECCCHHHHHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHCCCCCH
VPRIHALGMKITPWTVRSRDEVPPLLKAGVDGIVTDFPDYVPKKVR
HHHHHHCCCEECCEEECCCCCCCHHHHHCCCHHHHCCHHCCCCCCC
>Mature Secondary Structure 
SALFKKLMLSSLIGVSIGSALFAPNAGAQEPAVKPKKVDVIAHRGASGYAPENTMAAFD
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHH
KALQMKADYIELDVQMSKDGELVIIHDTTVNRTTDIDSVLPVAVKDLTLAELRKLDAGSF
HHHHHHCCEEEEEEEECCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
FGPQFAGERIPTFEEVLDRYKGKVGMLIELKEPARYPGIEGKVSAALKERRMDKPKNGKI
CCCCCCCCCCCCHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCEE
IVQSFDFNSVYKIHQLLPSMPTGVLTSKAADLTDAKLKEFSGYAKYVNANLKNVAADPTL
EEEECCCHHHHHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHCCCCCH
VPRIHALGMKITPWTVRSRDEVPPLLKAGVDGIVTDFPDYVPKKVR
HHHHHHCCCEECCEEECCCCCCCHHHHHCCCHHHHCCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]