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The map label for this gene is slr [H]

Identifier: 52787379

GI number: 52787379

Start: 3523069

End: 3523527

Strand: Direct

Name: slr [H]

Synonym: BLi03695

Alternate gene names: 52787379

Gene position: 3523069-3523527 (Clockwise)

Preceding gene: 52787363

Following gene: 52787380

Centisome position: 83.43

GC content: 45.32

Gene sequence:

>459_bases
ATGATCGGAAGAGTCATCCGAATGTACAGAAAGAGAAAAGGCTACTCCATTAACCAGCTTGCTGATATAGCAGGCGTATC
AAAATCATATTTAAGCAAAATTGAACGCGGCGTTCACAGAAATCCGTCAGTCGAATTCCTGAAAAAAATCTCCCGGGCGC
TGAAAGTCGAATTAAAGGAATTGTTTGATACCGAAGTGATCCTTTATCGCCGGACTGAGCAGGAAGATGAGTGGAGAACC
CATCTTGTACAGGCCGTGCAGGCCGGGATGAACCAGGAAGAACTGTTTCAATTCACACATCGCCTCAAGCAGAAAAAGAA
AGAACGGGCGCTTTATCGAAACAGAGAGCTGACCCGGGCGAATATCGACGAATGGAGAGCCCTTATGCTGGAGGCCAAAG
AAATGGGACTGACCGTCAAAGAAGTAGAAGCGTTTTTGATGAGGACAAAAAATCATTAA

Upstream 100 bases:

>100_bases
CGATATCTTAAATTTTTGAATTTTATAAAGAACAAATTATTTCTTATAATGAACAAGAAAGCGTTTTATATGAATGGCAA
GGGGAAGGGGAGGATTCAGT

Downstream 100 bases:

>100_bases
TTTATCCTGCATTCATATTTTTTTTAGAAGAAAACGGGTGCTTTTGACTTGAACCATTCATCCGGATATAAATCCACATT
TCCATTTAAACTTGCCGAAA

Product: Slr

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 152; Mature: 152

Protein sequence:

>152_residues
MIGRVIRMYRKRKGYSINQLADIAGVSKSYLSKIERGVHRNPSVEFLKKISRALKVELKELFDTEVILYRRTEQEDEWRT
HLVQAVQAGMNQEELFQFTHRLKQKKKERALYRNRELTRANIDEWRALMLEAKEMGLTVKEVEAFLMRTKNH

Sequences:

>Translated_152_residues
MIGRVIRMYRKRKGYSINQLADIAGVSKSYLSKIERGVHRNPSVEFLKKISRALKVELKELFDTEVILYRRTEQEDEWRT
HLVQAVQAGMNQEELFQFTHRLKQKKKERALYRNRELTRANIDEWRALMLEAKEMGLTVKEVEAFLMRTKNH
>Mature_152_residues
MIGRVIRMYRKRKGYSINQLADIAGVSKSYLSKIERGVHRNPSVEFLKKISRALKVELKELFDTEVILYRRTEQEDEWRT
HLVQAVQAGMNQEELFQFTHRLKQKKKERALYRNRELTRANIDEWRALMLEAKEMGLTVKEVEAFLMRTKNH

Specific function: Represses sigma(D)-dependent flagellar genes and activate the eps and yqxM operons. Repressor activity is regulated by slrA. Controls the initiation of biofilm formation [H]

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Sin domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR012288
- InterPro:   IPR010981 [H]

Pfam domain/function: PF01381 HTH_3; PF08671 SinI [H]

EC number: NA

Molecular weight: Translated: 18180; Mature: 18180

Theoretical pI: Translated: 10.62; Mature: 10.62

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIGRVIRMYRKRKGYSINQLADIAGVSKSYLSKIERGVHRNPSVEFLKKISRALKVELKE
CHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
LFDTEVILYRRTEQEDEWRTHLVQAVQAGMNQEELFQFTHRLKQKKKERALYRNRELTRA
HHCHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHC
NIDEWRALMLEAKEMGLTVKEVEAFLMRTKNH
CHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIGRVIRMYRKRKGYSINQLADIAGVSKSYLSKIERGVHRNPSVEFLKKISRALKVELKE
CHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
LFDTEVILYRRTEQEDEWRTHLVQAVQAGMNQEELFQFTHRLKQKKKERALYRNRELTRA
HHCHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHC
NIDEWRALMLEAKEMGLTVKEVEAFLMRTKNH
CHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969506; 9384377 [H]