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The map label for this gene is yvfC [H]

Identifier: 52787367

GI number: 52787367

Start: 3509688

End: 3510290

Strand: Reverse

Name: yvfC [H]

Synonym: BLi03683

Alternate gene names: 52787367

Gene position: 3510290-3509688 (Counterclockwise)

Preceding gene: 52787368

Following gene: 52787366

Centisome position: 83.13

GC content: 49.59

Gene sequence:

>603_bases
GTGCTAGCGAAACGGTTTTTCGATCTTGCATTGTCAGTTATTTTGCTGGTCGCGCTCAGTCCGGCCATGATTCTGACGGC
TTGTCTCATCAGATGGAAAATCGGCTCGCCTGTTTTATTTCGCCAAACCCGTCCGGGGCTGAATGGCGAGCCTTTTACAT
TATATAAATTCAGAACGATGACTGATGAAAGAGATGCAGCAGGCAATCTGCTAAGCGATGAAAAGCGGCTGACAAAGACG
GGGCGGCTGATCAGAAAAACGAGCCTTGACGAATTGCCGCAGCTGATCAACGTTATCAAAGGAGACCTCAGCCTCGTCGG
GCCGCGCCCGCTTTTGATGGAGTATATCCCCCTTTATACGAAGCGGCAGTGGAGACGCCACGAAGTCAAGCCGGGCATCA
CGGGCTGGGCGCAGATCAACGGGAGAAATAAAGTGACATGGGAGGAAAAATTTGAACTCGATGTCTGGTATGTGGATCAT
CGTTCTTTTTTGCTTGATCTCAAAATCCTTTTGTTGACTGTCGTAAAGGTTTTGAAGTCGGAAGGCGTCAGCCAGGACCG
GCATGTGACAGCAGAAAAATTTACAGGGAGAAGGAATGCCTGA

Upstream 100 bases:

>100_bases
AACGGCGCATTGTCACAACGAAGCTGCAAGCATACCGGTGTTCTCTATCCTTCCCGTTTCAAAAGGGATTTTTTAAATAA
AAGAAAGGGGTGCGTTTTTC

Downstream 100 bases:

>100_bases
TGCAAAACGTGGTGATCATCGGAGCCGGCGGCCATGGGAAAGTCGTTCGGGAACTTGTAAAAGAGCGGCCGGATACGGAG
CTTGCCGGTATTCTTGATGA

Product: YvfC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 200; Mature: 200

Protein sequence:

>200_residues
MLAKRFFDLALSVILLVALSPAMILTACLIRWKIGSPVLFRQTRPGLNGEPFTLYKFRTMTDERDAAGNLLSDEKRLTKT
GRLIRKTSLDELPQLINVIKGDLSLVGPRPLLMEYIPLYTKRQWRRHEVKPGITGWAQINGRNKVTWEEKFELDVWYVDH
RSFLLDLKILLLTVVKVLKSEGVSQDRHVTAEKFTGRRNA

Sequences:

>Translated_200_residues
MLAKRFFDLALSVILLVALSPAMILTACLIRWKIGSPVLFRQTRPGLNGEPFTLYKFRTMTDERDAAGNLLSDEKRLTKT
GRLIRKTSLDELPQLINVIKGDLSLVGPRPLLMEYIPLYTKRQWRRHEVKPGITGWAQINGRNKVTWEEKFELDVWYVDH
RSFLLDLKILLLTVVKVLKSEGVSQDRHVTAEKFTGRRNA
>Mature_200_residues
MLAKRFFDLALSVILLVALSPAMILTACLIRWKIGSPVLFRQTRPGLNGEPFTLYKFRTMTDERDAAGNLLSDEKRLTKT
GRLIRKTSLDELPQLINVIKGDLSLVGPRPLLMEYIPLYTKRQWRRHEVKPGITGWAQINGRNKVTWEEKFELDVWYVDH
RSFLLDLKILLLTVVKVLKSEGVSQDRHVTAEKFTGRRNA

Specific function: May be involved in the production of the exopolysaccharide (EPS) component of the extracellular matrix during biofilm formation. EPS is responsible for the adhesion of chains of cells into bundles [H]

COG id: COG2148

COG function: function code M; Sugar transferases involved in lipopolysaccharide synthesis

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial sugar transferase family [H]

Homologues:

Organism=Escherichia coli, GI1788360, Length=185, Percent_Identity=40.5405405405405, Blast_Score=136, Evalue=1e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003362 [H]

Pfam domain/function: PF02397 Bac_transf [H]

EC number: NA

Molecular weight: Translated: 23058; Mature: 23058

Theoretical pI: Translated: 10.69; Mature: 10.69

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAKRFFDLALSVILLVALSPAMILTACLIRWKIGSPVLFRQTRPGLNGEPFTLYKFRTM
CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCEEEEEEEEC
TDERDAAGNLLSDEKRLTKTGRLIRKTSLDELPQLINVIKGDLSLVGPRPLLMEYIPLYT
CCCCHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHH
KRQWRRHEVKPGITGWAQINGRNKVTWEEKFELDVWYVDHRSFLLDLKILLLTVVKVLKS
HHHHHHHCCCCCCCCEEEECCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHH
EGVSQDRHVTAEKFTGRRNA
CCCCCCCCCHHHHHCCCCCC
>Mature Secondary Structure
MLAKRFFDLALSVILLVALSPAMILTACLIRWKIGSPVLFRQTRPGLNGEPFTLYKFRTM
CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCEEEEEEEEC
TDERDAAGNLLSDEKRLTKTGRLIRKTSLDELPQLINVIKGDLSLVGPRPLLMEYIPLYT
CCCCHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHH
KRQWRRHEVKPGITGWAQINGRNKVTWEEKFELDVWYVDHRSFLLDLKILLLTVVKVLKS
HHHHHHHCCCCCCCCEEEECCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHH
EGVSQDRHVTAEKFTGRRNA
CCCCCCCCCHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969506; 9384377 [H]