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The map label for this gene is rghRB [H]

Identifier: 52787332

GI number: 52787332

Start: 3475094

End: 3475498

Strand: Direct

Name: rghRB [H]

Synonym: BLi03647

Alternate gene names: 52787332

Gene position: 3475094-3475498 (Clockwise)

Preceding gene: 52787331

Following gene: 52787337

Centisome position: 82.3

GC content: 53.83

Gene sequence:

>405_bases
ATGGCGATGACAAGGTTCGGCGAGCGGCTCAAAGAGCTGAGGGAACAAAGAAGCCTGTCGGTTAATCAGCTTGCCATGTA
TGCCGGTGTGAGCGCCGCAGCCATTTCCAGAATCGAAAACGGCCACCGCGGCGTTCCCAAGCCCGCGACGATCAGAAAAT
TGGCCGAGGCTCTGAAAATGCCGTACGAGCAGCTCATGGATATTGCCGGTTATATGAGAGCTGACGAGATTCGCGAACAG
CCGCGCGGCTATGTCACGATGCAGGAGATCGCGGCCAAGCACGGCGTCGAAGACCTGTGGCTGTTTAAACCCGAGAAATG
GGACTGTTTGTCCCGCGAAGACCTGCTCAACCTCGAACAGTATTTTCATTTTTTGGTTAATGAAGCGAAGAAGCGCCAAT
CATAA

Upstream 100 bases:

>100_bases
ATCCCTTATGTTAACTTTTGTCAATATTTTTCCTGTCTAAGTATTTCCTATAGTCAACATTTGTATTAAAATGTTCATAT
CATGAATTTGCGGGGGGGGG

Downstream 100 bases:

>100_bases
AAAGCCGAATTTCCCTTTTAGGAGAAGTTCGGCTTTTTTCGGCTGCCTTAAGCGGCATCCGGATTCGGCGTCTTGCCTTT
ATGATGCTTAACGGGGCTCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 134; Mature: 133

Protein sequence:

>134_residues
MAMTRFGERLKELREQRSLSVNQLAMYAGVSAAAISRIENGHRGVPKPATIRKLAEALKMPYEQLMDIAGYMRADEIREQ
PRGYVTMQEIAAKHGVEDLWLFKPEKWDCLSREDLLNLEQYFHFLVNEAKKRQS

Sequences:

>Translated_134_residues
MAMTRFGERLKELREQRSLSVNQLAMYAGVSAAAISRIENGHRGVPKPATIRKLAEALKMPYEQLMDIAGYMRADEIREQ
PRGYVTMQEIAAKHGVEDLWLFKPEKWDCLSREDLLNLEQYFHFLVNEAKKRQS
>Mature_133_residues
AMTRFGERLKELREQRSLSVNQLAMYAGVSAAAISRIENGHRGVPKPATIRKLAEALKMPYEQLMDIAGYMRADEIREQP
RGYVTMQEIAAKHGVEDLWLFKPEKWDCLSREDLLNLEQYFHFLVNEAKKRQS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR016759 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 15556; Mature: 15425

Theoretical pI: Translated: 9.01; Mature: 9.01

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAMTRFGERLKELREQRSLSVNQLAMYAGVSAAAISRIENGHRGVPKPATIRKLAEALKM
CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHC
PYEQLMDIAGYMRADEIREQPRGYVTMQEIAAKHGVEDLWLFKPEKWDCLSREDLLNLEQ
CHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHEEECCCCCCCCCHHHHHHHHH
YFHFLVNEAKKRQS
HHHHHHHHHHHCCC
>Mature Secondary Structure 
AMTRFGERLKELREQRSLSVNQLAMYAGVSAAAISRIENGHRGVPKPATIRKLAEALKM
CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHC
PYEQLMDIAGYMRADEIREQPRGYVTMQEIAAKHGVEDLWLFKPEKWDCLSREDLLNLEQ
CHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHEEECCCCCCCCCHHHHHHHHH
YFHFLVNEAKKRQS
HHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]