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The map label for this gene is ydcL [H]

Identifier: 52787324

GI number: 52787324

Start: 3467992

End: 3469086

Strand: Direct

Name: ydcL [H]

Synonym: BLi03639

Alternate gene names: 52787324

Gene position: 3467992-3469086 (Clockwise)

Preceding gene: 52787320

Following gene: 52787331

Centisome position: 82.13

GC content: 35.71

Gene sequence:

>1095_bases
ATGCCTGTCTATAAAGACAAGGAAAGGGGAACATATTATTTTATCATATCCTATACAAACAGAAATGGAGAATACAAACA
GATAAAAAGAAGAGGATTTAAATCAAGCGGAGAAGCGAAGAGGGCTGAAGCAGAAACCCTTTTACGACTAGAAACTGACG
ACGGAGAAAATGAAGATAATCCAACTTTTGAATTTGTCGCAAAAGAATACTTGAAATGGTACAAAAAAAGAAGAAAGGCA
TCATCATATTTAAAAACAAGTAGCATTATAAATACTCACTTGATACCAAGGTTCGGGAGCAAGAAAATTAACAACATTCG
TTCAAGGGACATAATGCGTTTTCAGAATGATTTGCTTGATAGATATGCCGTTGCGCACGTCAAAAAGATACATCAAGTTT
TATCGGCTGTATTTAACTTTGCGATTAAACAAGAGTACACAAAAGATAATCCAGCACGTTTAGCAGGAAATGTGGATATA
GAAGAAGATAAACACATCAATTATTGGACGTTAGACGAGTTTAAAGCGTTTATTCAACACGTAGATGATCAGTTATATTA
TGCACTTTTTATGACACTCTATTATAGCGGTATGCGAAAGGGAGAGTTATTAGCTCTCACATGGGGAGATATTGATTTTG
ACAGTAACACTATAAATATCGATAAGACCGTTTATAACCGAATAGTGACTAAACCAAAAACAACATCGTCTATACGAAAA
ATCATGATGCCTAAACACGTAATGAGGTTATTAGCTCAATTAAAAGCAAAAACCAAGACAAAAATGACATATGTAGTATT
TGGGGAATTTCATGACCACATTTCAACTACAACACTAGATAGAAAATACGCTGAATACGTTAAGGCGGCAAAGGTTAAAA
AAATTCGTCTACATGATTTCCGCCATTCACATGCTAGCTATTTAATTAACAGGAACACAATCCCATCTGTCGTGGCAAAA
AGGCTCGGTCACAAGGATGTGGGCACAACACTCAACATATACAGCCATTTATATCCGAGCACAGAAAAAGAAGCCGTCCT
CAAAATGGAAGACGACTTCAAGACTGCTGAAATTATTCACCTTAAAGAAGCTTGA

Upstream 100 bases:

>100_bases
GTAGTTCTATATATCGCAGAATTAGATTAAGTTGTTAGCGCTAAAAATTTAATCACAGGCGGGACGATCACCCGCCTTTT
TTTAAAGGAGTGAATTTAGT

Downstream 100 bases:

>100_bases
TACTCTAGCGCGTAAAAATTCTTACCACAATTCTTACCACGGTTTCATAAACCCTATCAAATCAACCTTAAAACTCAAAA
GATGGAGACGGTGGGAGTCG

Product: YdcL

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 364; Mature: 363

Protein sequence:

>364_residues
MPVYKDKERGTYYFIISYTNRNGEYKQIKRRGFKSSGEAKRAEAETLLRLETDDGENEDNPTFEFVAKEYLKWYKKRRKA
SSYLKTSSIINTHLIPRFGSKKINNIRSRDIMRFQNDLLDRYAVAHVKKIHQVLSAVFNFAIKQEYTKDNPARLAGNVDI
EEDKHINYWTLDEFKAFIQHVDDQLYYALFMTLYYSGMRKGELLALTWGDIDFDSNTINIDKTVYNRIVTKPKTTSSIRK
IMMPKHVMRLLAQLKAKTKTKMTYVVFGEFHDHISTTTLDRKYAEYVKAAKVKKIRLHDFRHSHASYLINRNTIPSVVAK
RLGHKDVGTTLNIYSHLYPSTEKEAVLKMEDDFKTAEIIHLKEA

Sequences:

>Translated_364_residues
MPVYKDKERGTYYFIISYTNRNGEYKQIKRRGFKSSGEAKRAEAETLLRLETDDGENEDNPTFEFVAKEYLKWYKKRRKA
SSYLKTSSIINTHLIPRFGSKKINNIRSRDIMRFQNDLLDRYAVAHVKKIHQVLSAVFNFAIKQEYTKDNPARLAGNVDI
EEDKHINYWTLDEFKAFIQHVDDQLYYALFMTLYYSGMRKGELLALTWGDIDFDSNTINIDKTVYNRIVTKPKTTSSIRK
IMMPKHVMRLLAQLKAKTKTKMTYVVFGEFHDHISTTTLDRKYAEYVKAAKVKKIRLHDFRHSHASYLINRNTIPSVVAK
RLGHKDVGTTLNIYSHLYPSTEKEAVLKMEDDFKTAEIIHLKEA
>Mature_363_residues
PVYKDKERGTYYFIISYTNRNGEYKQIKRRGFKSSGEAKRAEAETLLRLETDDGENEDNPTFEFVAKEYLKWYKKRRKAS
SYLKTSSIINTHLIPRFGSKKINNIRSRDIMRFQNDLLDRYAVAHVKKIHQVLSAVFNFAIKQEYTKDNPARLAGNVDIE
EDKHINYWTLDEFKAFIQHVDDQLYYALFMTLYYSGMRKGELLALTWGDIDFDSNTINIDKTVYNRIVTKPKTTSSIRKI
MMPKHVMRLLAQLKAKTKTKMTYVVFGEFHDHISTTTLDRKYAEYVKAAKVKKIRLHDFRHSHASYLINRNTIPSVVAKR
LGHKDVGTTLNIYSHLYPSTEKEAVLKMEDDFKTAEIIHLKEA

Specific function: Putative integrase that is involved in the insertion of the integrative and conjugative element ICEBs1. Required for the excision of ICEBs1 from the donor cell genome and subsequent integration in the recipient cell genome. Appears not to be transferred t

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1788690, Length=295, Percent_Identity=23.728813559322, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 42712; Mature: 42580

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVYKDKERGTYYFIISYTNRNGEYKQIKRRGFKSSGEAKRAEAETLLRLETDDGENEDN
CCCCCCCCCCEEEEEEEEECCCCHHHHHHHCCCCCCCCHHHHHHHHEEEEECCCCCCCCC
PTFEFVAKEYLKWYKKRRKASSYLKTSSIINTHLIPRFGSKKINNIRSRDIMRFQNDLLD
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
RYAVAHVKKIHQVLSAVFNFAIKQEYTKDNPARLAGNVDIEEDKHINYWTLDEFKAFIQH
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHEECCCCCCCCCCCCEEEHHHHHHHHHH
VDDQLYYALFMTLYYSGMRKGELLALTWGDIDFDSNTINIDKTVYNRIVTKPKTTSSIRK
HHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCEEEEHHHHHHHHHCCCCCHHHHHH
IMMPKHVMRLLAQLKAKTKTKMTYVVFGEFHDHISTTTLDRKYAEYVKAAKVKKIRLHDF
HHCHHHHHHHHHHHHHHHHHEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RHSHASYLINRNTIPSVVAKRLGHKDVGTTLNIYSHLYPSTEKEAVLKMEDDFKTAEIIH
HHHHHHHEECCCCHHHHHHHHCCCCCCCCHHHHHHHHCCCCCHHHEEEECCCCCCEEEEE
LKEA
EECC
>Mature Secondary Structure 
PVYKDKERGTYYFIISYTNRNGEYKQIKRRGFKSSGEAKRAEAETLLRLETDDGENEDN
CCCCCCCCCEEEEEEEEECCCCHHHHHHHCCCCCCCCHHHHHHHHEEEEECCCCCCCCC
PTFEFVAKEYLKWYKKRRKASSYLKTSSIINTHLIPRFGSKKINNIRSRDIMRFQNDLLD
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
RYAVAHVKKIHQVLSAVFNFAIKQEYTKDNPARLAGNVDIEEDKHINYWTLDEFKAFIQH
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHEECCCCCCCCCCCCEEEHHHHHHHHHH
VDDQLYYALFMTLYYSGMRKGELLALTWGDIDFDSNTINIDKTVYNRIVTKPKTTSSIRK
HHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCEEEEHHHHHHHHHCCCCCHHHHHH
IMMPKHVMRLLAQLKAKTKTKMTYVVFGEFHDHISTTTLDRKYAEYVKAAKVKKIRLHDF
HHCHHHHHHHHHHHHHHHHHEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RHSHASYLINRNTIPSVVAKRLGHKDVGTTLNIYSHLYPSTEKEAVLKMEDDFKTAEIIH
HHHHHHHEECCCCHHHHHHHHCCCCCCCCHHHHHHHHCCCCCHHHEEEECCCCCCEEEEE
LKEA
EECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]