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The map label for this gene is ugpB [C]

Identifier: 52787230

GI number: 52787230

Start: 3382329

End: 3383543

Strand: Direct

Name: ugpB [C]

Synonym: BLi03540

Alternate gene names: 52787230

Gene position: 3382329-3383543 (Clockwise)

Preceding gene: 52787225

Following gene: 52787231

Centisome position: 80.1

GC content: 48.4

Gene sequence:

>1215_bases
TTGAAAAAATCGTGTCTGATGATCGTCTGCCTCGCCTTTCTTCTTGCTTTTTCCGCAGGCTGCAAAAGCAGCACCGGCAC
AAAGCATACGGAAGAAATAAAAGTCTGGGATTACTTTACCGGCAAGCAGCAGGATCTTTATCATGAGCTTGTCGAACAGT
ACAATCGGTCCCAGGACCGGTACAAGGTCGTAACGGAGTACATTCCTTTTAATGAAGTGAAAAAGCAGCTGTCTGTCGGT
ACAGCCGGCAATGCCATGCCTGACGCCGTATTCCTTGACAATGTCGACAATGCTTCATTCGCCGCTATGGGCGTGCTCGA
AGATTTGACGGAGAAAATCGAACAATGGGGGCAGGCTGACCAGTTTTATGAGGGGCCTCTATCATCAGCCGGATATGAAG
AGAAGTACTACGGCATCCCTTTCGCAAGCAATGCGCTTGCCTTGTTTTACAACAAAGACCTCTTGAAGAATGCAGGGATC
TCCAAACCGCCTGAAACGTGGAGCGATCTGAAAAAAGCGGCGGAAAAAACGAGCAAAGGCCAAACGAAAAGATTTGCCCT
GTCAGCCGTAAAATCAGAGGAAAGCGCTTTTCAATTTTATCCGTTTCTTTTGTCTTCCGGAGCAGATCTAAAACAGCTGA
ATTCAAAAGAAGCAGCCTCTTCTCTTCAGTTTTTAACAGATCTGATCAAGAAAGGCGCAATGAGCAAGGAAGTGTTAAAC
GCCACCCAGGATGATCTGGCCAGACAGTTTGCAGCAGGTCAGCTCGCCATGATGATCAACGGCTCCTGGAATATTGAACG
GCTGGAAGAAGCCGAAGACTTAAATTACGGGATTACCTATATCCCGAAAGATCAAACATTCGCTTCTGCCCTCGGCGGCG
AAAATATTGCCGTCGTTAAAGGAAAAAACACCGCCGGCGCCTGGGATTTTATCAGTTGGCTGATCGATCCGGAGCGGCTC
GAAACGCTGACAGCAGAAACAGGCGTGTTTCCGCCGCGCAAAGATTTGCTCGAATCATCGAGCCATTGGAAAACAGATGA
TAATTTAAAAGCCTTCATTCCAATCATAGAGATCGCATCAGCCCGCGGCCCTTCGAAAGACTGGCCGAAGATTTCGGAAG
CTTTGCAGACTGCCCTGCAGGAAGCATTGAGCGAAAGCAAAACGCCGAAAGAAGCGCTGGATGAGGCCGCGCAAAAAATC
AGCGCCTTAAACTAG

Upstream 100 bases:

>100_bases
CGCGTCTGCGAAAACTCTGCTGGCATATTGGAAGCAATGCCCAAATATACTTAGTTTAGCTATTAAACTAACAAGCTTTT
TTCATAAGGAGTGAGCGCTT

Downstream 100 bases:

>100_bases
CTTTAAGCGCACGAAGGAGTTTTGTCATGATCAGAGCCATTGTCCGTAAATGGGAAGGGTACTTTTATTTGTTTCCGGCA
GTTCTTTTTATGCTTGCTCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 404; Mature: 404

Protein sequence:

>404_residues
MKKSCLMIVCLAFLLAFSAGCKSSTGTKHTEEIKVWDYFTGKQQDLYHELVEQYNRSQDRYKVVTEYIPFNEVKKQLSVG
TAGNAMPDAVFLDNVDNASFAAMGVLEDLTEKIEQWGQADQFYEGPLSSAGYEEKYYGIPFASNALALFYNKDLLKNAGI
SKPPETWSDLKKAAEKTSKGQTKRFALSAVKSEESAFQFYPFLLSSGADLKQLNSKEAASSLQFLTDLIKKGAMSKEVLN
ATQDDLARQFAAGQLAMMINGSWNIERLEEAEDLNYGITYIPKDQTFASALGGENIAVVKGKNTAGAWDFISWLIDPERL
ETLTAETGVFPPRKDLLESSSHWKTDDNLKAFIPIIEIASARGPSKDWPKISEALQTALQEALSESKTPKEALDEAAQKI
SALN

Sequences:

>Translated_404_residues
MKKSCLMIVCLAFLLAFSAGCKSSTGTKHTEEIKVWDYFTGKQQDLYHELVEQYNRSQDRYKVVTEYIPFNEVKKQLSVG
TAGNAMPDAVFLDNVDNASFAAMGVLEDLTEKIEQWGQADQFYEGPLSSAGYEEKYYGIPFASNALALFYNKDLLKNAGI
SKPPETWSDLKKAAEKTSKGQTKRFALSAVKSEESAFQFYPFLLSSGADLKQLNSKEAASSLQFLTDLIKKGAMSKEVLN
ATQDDLARQFAAGQLAMMINGSWNIERLEEAEDLNYGITYIPKDQTFASALGGENIAVVKGKNTAGAWDFISWLIDPERL
ETLTAETGVFPPRKDLLESSSHWKTDDNLKAFIPIIEIASARGPSKDWPKISEALQTALQEALSESKTPKEALDEAAQKI
SALN
>Mature_404_residues
MKKSCLMIVCLAFLLAFSAGCKSSTGTKHTEEIKVWDYFTGKQQDLYHELVEQYNRSQDRYKVVTEYIPFNEVKKQLSVG
TAGNAMPDAVFLDNVDNASFAAMGVLEDLTEKIEQWGQADQFYEGPLSSAGYEEKYYGIPFASNALALFYNKDLLKNAGI
SKPPETWSDLKKAAEKTSKGQTKRFALSAVKSEESAFQFYPFLLSSGADLKQLNSKEAASSLQFLTDLIKKGAMSKEVLN
ATQDDLARQFAAGQLAMMINGSWNIERLEEAEDLNYGITYIPKDQTFASALGGENIAVVKGKNTAGAWDFISWLIDPERL
ETLTAETGVFPPRKDLLESSSHWKTDDNLKAFIPIIEIASARGPSKDWPKISEALQTALQEALSESKTPKEALDEAAQKI
SALN

Specific function: Probably part of an ABC transporter complex [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

Organism=Escherichia coli, GI1789862, Length=408, Percent_Identity=25.4901960784314, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1790466, Length=210, Percent_Identity=30, Blast_Score=68, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR006061 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 44723; Mature: 44723

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01037 SBP_BACTERIAL_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKSCLMIVCLAFLLAFSAGCKSSTGTKHTEEIKVWDYFTGKQQDLYHELVEQYNRSQDR
CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCHHH
YKVVTEYIPFNEVKKQLSVGTAGNAMPDAVFLDNVDNASFAAMGVLEDLTEKIEQWGQAD
HHHHHHHCCHHHHHHHHHCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHCCHH
QFYEGPLSSAGYEEKYYGIPFASNALALFYNKDLLKNAGISKPPETWSDLKKAAEKTSKG
HHHCCCCCCCCCCCCEECCCCCCCCEEEEECHHHHHHCCCCCCCHHHHHHHHHHHHHCCC
QTKRFALSAVKSEESAFQFYPFLLSSGADLKQLNSKEAASSLQFLTDLIKKGAMSKEVLN
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
ATQDDLARQFAAGQLAMMINGSWNIERLEEAEDLNYGITYIPKDQTFASALGGENIAVVK
HHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCCCEECCCCHHHHHHHCCCCEEEEE
GKNTAGAWDFISWLIDPERLETLTAETGVFPPRKDLLESSSHWKTDDNLKAFIPIIEIAS
CCCCCCHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHH
ARGPSKDWPKISEALQTALQEALSESKTPKEALDEAAQKISALN
CCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKKSCLMIVCLAFLLAFSAGCKSSTGTKHTEEIKVWDYFTGKQQDLYHELVEQYNRSQDR
CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCHHH
YKVVTEYIPFNEVKKQLSVGTAGNAMPDAVFLDNVDNASFAAMGVLEDLTEKIEQWGQAD
HHHHHHHCCHHHHHHHHHCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHCCHH
QFYEGPLSSAGYEEKYYGIPFASNALALFYNKDLLKNAGISKPPETWSDLKKAAEKTSKG
HHHCCCCCCCCCCCCEECCCCCCCCEEEEECHHHHHHCCCCCCCHHHHHHHHHHHHHCCC
QTKRFALSAVKSEESAFQFYPFLLSSGADLKQLNSKEAASSLQFLTDLIKKGAMSKEVLN
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
ATQDDLARQFAAGQLAMMINGSWNIERLEEAEDLNYGITYIPKDQTFASALGGENIAVVK
HHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCCCEECCCCHHHHHHHCCCCEEEEE
GKNTAGAWDFISWLIDPERLETLTAETGVFPPRKDLLESSSHWKTDDNLKAFIPIIEIAS
CCCCCCHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHH
ARGPSKDWPKISEALQTALQEALSESKTPKEALDEAAQKISALN
CCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA