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The map label for this gene is ydhC [H]

Identifier: 52787198

GI number: 52787198

Start: 3346620

End: 3347300

Strand: Direct

Name: ydhC [H]

Synonym: BLi03507

Alternate gene names: 52787198

Gene position: 3346620-3347300 (Clockwise)

Preceding gene: 52787191

Following gene: 52787199

Centisome position: 79.25

GC content: 49.93

Gene sequence:

>681_bases
ATGCCGATACCGAAAAACTATACGCCTCAGGTCAGACTTTCAGCAAAGGAAAAAGCGTTTCACCAATTGCAGCGCTGGAT
TGTAGACGGAACCCTTGAACCCGGCGAAAAAGTCACGGATGTCGATCTGGCCGAAGCGCTCGGCGTCAGCCGCACACCGG
TCAGAGAAGCGCTTCAGCTCCTTGAATCCCAAGGGTTTGTGGAAATGAAGCCGGGAAAAGAAACAAAGATCACGCTCATT
CATCCCGATGATGCGCTGGCCGTCTATCCTCCGCTCGCACATCTCCAGGCTTTGGCGGCAGAACTGGCTGCGCCGCTTTT
GACGGAAGAAGAGATCGCCGAGCTCAAAAAACTCGCTGCTCAATACGAAACCGCGTTTAAAGAGGAAAGGAACCACGATG
CAGCTGAACTGGACGAACAGTTCCACCATTTGATTACAGAAGCGGCTAAAAACCCGTATGTTCTTCAGTTTTCTGCCGTT
CTGCAGCTTCATGTCAGACGGATGAAGTATGTGTTTTTCAATCGGCCTGCTGCTCCGAAAATGCAGTCCGCCGCCGAGCA
TTGGAAAATCATCGCCGCTTTTGAAAAAAACGATCCGAAATTGGCGGCTGAAGTGATGAAAAGGAATTGGCTCCGTCCGA
TGGAAGATATTCATAAAGTTTTAAAAGGCAGGGAACAATAA

Upstream 100 bases:

>100_bases
AGGTCTGTATATGAGATTCTGAAAAGGAGATTTTCAGCTGAAAAACGTTGTTTTTGCTAAAACAATTACGATATATTGCA
TATAGAGAAAGGGTGATTTT

Downstream 100 bases:

>100_bases
AGCGCCAAGCACGATTTTCGACCGCGGTATCCAGCTGCGATATACTGTTTATTAGATGTTTTCTTTCATCTTAACTCTGA
AACAAGGATTGATGGCATAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 225

Protein sequence:

>226_residues
MPIPKNYTPQVRLSAKEKAFHQLQRWIVDGTLEPGEKVTDVDLAEALGVSRTPVREALQLLESQGFVEMKPGKETKITLI
HPDDALAVYPPLAHLQALAAELAAPLLTEEEIAELKKLAAQYETAFKEERNHDAAELDEQFHHLITEAAKNPYVLQFSAV
LQLHVRRMKYVFFNRPAAPKMQSAAEHWKIIAAFEKNDPKLAAEVMKRNWLRPMEDIHKVLKGREQ

Sequences:

>Translated_226_residues
MPIPKNYTPQVRLSAKEKAFHQLQRWIVDGTLEPGEKVTDVDLAEALGVSRTPVREALQLLESQGFVEMKPGKETKITLI
HPDDALAVYPPLAHLQALAAELAAPLLTEEEIAELKKLAAQYETAFKEERNHDAAELDEQFHHLITEAAKNPYVLQFSAV
LQLHVRRMKYVFFNRPAAPKMQSAAEHWKIIAAFEKNDPKLAAEVMKRNWLRPMEDIHKVLKGREQ
>Mature_225_residues
PIPKNYTPQVRLSAKEKAFHQLQRWIVDGTLEPGEKVTDVDLAEALGVSRTPVREALQLLESQGFVEMKPGKETKITLIH
PDDALAVYPPLAHLQALAAELAAPLLTEEEIAELKKLAAQYETAFKEERNHDAAELDEQFHHLITEAAKNPYVLQFSAVL
QLHVRRMKYVFFNRPAAPKMQSAAEHWKIIAAFEKNDPKLAAEVMKRNWLRPMEDIHKVLKGREQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=206, Percent_Identity=23.7864077669903, Blast_Score=71, Evalue=7e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 25727; Mature: 25596

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPIPKNYTPQVRLSAKEKAFHQLQRWIVDGTLEPGEKVTDVDLAEALGVSRTPVREALQL
CCCCCCCCCCEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHH
LESQGFVEMKPGKETKITLIHPDDALAVYPPLAHLQALAAELAAPLLTEEEIAELKKLAA
HHHCCCEEECCCCCCEEEEECCCCCEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
QYETAFKEERNHDAAELDEQFHHLITEAAKNPYVLQFSAVLQLHVRRMKYVFFNRPAAPK
HHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHCCCCCCH
MQSAAEHWKIIAAFEKNDPKLAAEVMKRNWLRPMEDIHKVLKGREQ
HHHHHHHHEEEEEECCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCC
>Mature Secondary Structure 
PIPKNYTPQVRLSAKEKAFHQLQRWIVDGTLEPGEKVTDVDLAEALGVSRTPVREALQL
CCCCCCCCCEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHH
LESQGFVEMKPGKETKITLIHPDDALAVYPPLAHLQALAAELAAPLLTEEEIAELKKLAA
HHHCCCEEECCCCCCEEEEECCCCCEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
QYETAFKEERNHDAAELDEQFHHLITEAAKNPYVLQFSAVLQLHVRRMKYVFFNRPAAPK
HHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHCCCCCCH
MQSAAEHWKIIAAFEKNDPKLAAEVMKRNWLRPMEDIHKVLKGREQ
HHHHHHHHEEEEEECCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]