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The map label for this gene is nusB

Identifier: 52786341

GI number: 52786341

Start: 2523224

End: 2523613

Strand: Reverse

Name: nusB

Synonym: BLi02603

Alternate gene names: 52786341

Gene position: 2523613-2523224 (Counterclockwise)

Preceding gene: 52786342

Following gene: 52786340

Centisome position: 59.76

GC content: 43.59

Gene sequence:

>390_bases
ATGAAAAGAAGAACAGCAAGAGAAAAGGCTTTGCAGTCACTATTCCAGATTGATGTCAGTGATATAGAACCGAATGAAGC
GATGCAGCATGCCTTGGACGGGCAGGAAAGCGATGCTTTTTTCGAACAGCTCGTTTACGGGGTCTTAGAGAACAAAGAGA
AAATCGATGAGATGATCAAGCGGCATCTCGTCAATTGGAAGCTTGACAGGCTGGCGAATGTCGACCGCGCGATTTTGCGT
TTGTCCGCCTACGAAATGATCTTTTTAGATGACATACCTGTCAACGTCTCTATGAATGAAGCGATTGAACTGGCAAAGCA
ATTTGGTGATGACAAGTCGGCGAAGTTTGTAAACGGTGTTCTTTCTAACATTAAATCCGATCTTGAATAA

Upstream 100 bases:

>100_bases
AAACCGCGATTTTTGCATGCGGAAAGACTAAAAATATGATATGATCTCTTTGTGGCTTAAACGGCAAGCAGCAAAGAGGG
TAAAAGGAGAAAAAGAAAGA

Downstream 100 bases:

>100_bases
TCTAGGAGGAGAGCAAATGACAGCAACCATCATCGACGGGAAAGAAACAGCAAAGGAAAAGCGCGGGCAGCTGGCCAAGG
AAGTTGAAGAGCTGAAAAAA

Product: transcription antitermination protein NusB

Products: NA

Alternate protein names: Protein nusB

Number of amino acids: Translated: 129; Mature: 129

Protein sequence:

>129_residues
MKRRTAREKALQSLFQIDVSDIEPNEAMQHALDGQESDAFFEQLVYGVLENKEKIDEMIKRHLVNWKLDRLANVDRAILR
LSAYEMIFLDDIPVNVSMNEAIELAKQFGDDKSAKFVNGVLSNIKSDLE

Sequences:

>Translated_129_residues
MKRRTAREKALQSLFQIDVSDIEPNEAMQHALDGQESDAFFEQLVYGVLENKEKIDEMIKRHLVNWKLDRLANVDRAILR
LSAYEMIFLDDIPVNVSMNEAIELAKQFGDDKSAKFVNGVLSNIKSDLE
>Mature_129_residues
MKRRTAREKALQSLFQIDVSDIEPNEAMQHALDGQESDAFFEQLVYGVLENKEKIDEMIKRHLVNWKLDRLANVDRAILR
LSAYEMIFLDDIPVNVSMNEAIELAKQFGDDKSAKFVNGVLSNIKSDLE

Specific function: Involved in the transcription termination process

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family

Homologues:

Organism=Escherichia coli, GI1786618, Length=120, Percent_Identity=39.1666666666667, Blast_Score=75, Evalue=1e-15,

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NUSB_BACLD (Q65HI7)

Other databases:

- EMBL:   CP000002
- EMBL:   AE017333
- RefSeq:   YP_079756.1
- RefSeq:   YP_092170.1
- HSSP:   P0A780
- ProteinModelPortal:   Q65HI7
- SMR:   Q65HI7
- STRING:   Q65HI7
- EnsemblBacteria:   EBBACT00000058274
- EnsemblBacteria:   EBBACT00000060562
- GeneID:   3028963
- GeneID:   3100771
- GenomeReviews:   AE017333_GR
- GenomeReviews:   CP000002_GR
- KEGG:   bld:BLi02603
- KEGG:   bli:BL01528
- NMPDR:   fig|279010.5.peg.448
- eggNOG:   COG0781
- GeneTree:   EBGT00070000032128
- HOGENOM:   HBG734409
- OMA:   SHNDIAD
- ProtClustDB:   PRK00202
- BioCyc:   BLIC279010-1:BLI02603-MONOMER
- BioCyc:   BLIC279010:BL01528-MONOMER
- HAMAP:   MF_00073
- InterPro:   IPR011605
- InterPro:   IPR006027
- Gene3D:   G3DSA:1.10.940.10
- TIGRFAMs:   TIGR01951

Pfam domain/function: PF01029 NusB; SSF48013 NusB_RsmB_TIM44

EC number: NA

Molecular weight: Translated: 14828; Mature: 14828

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRRTAREKALQSLFQIDVSDIEPNEAMQHALDGQESDAFFEQLVYGVLENKEKIDEMIK
CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHH
RHLVNWKLDRLANVDRAILRLSAYEMIFLDDIPVNVSMNEAIELAKQFGDDKSAKFVNGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHCCCCHHHHHHHH
LSNIKSDLE
HHHHHHCCC
>Mature Secondary Structure
MKRRTAREKALQSLFQIDVSDIEPNEAMQHALDGQESDAFFEQLVYGVLENKEKIDEMIK
CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHH
RHLVNWKLDRLANVDRAILRLSAYEMIFLDDIPVNVSMNEAIELAKQFGDDKSAKFVNGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHCCCCHHHHHHHH
LSNIKSDLE
HHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA