BacMap

Definition	Bacillus licheniformis ATCC 14580, complete genome.
Accession	NC_006322
Length	4,222,645

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The map label for this gene is gdh [H]

Identifier: 52786304

GI number: 52786304

Start: 2484756

End: 2485541

Strand: Reverse

Name: gdh [H]

Synonym: BLi02566

Alternate gene names: 52786304

Gene position: 2485541-2484756 (Counterclockwise)

Preceding gene: 52786305

Following gene: 52786303

Centisome position: 58.86

GC content: 50.25

Gene sequence:

>786_bases
ATGTATCCAAGTTTAGAGGGAAAAACGGTCGTTATCACAGGGGCGGGTACAGGCCTTGGAAAAGCGATGGCACTGCGCTT
CGGTGCTGAAAAAGCCAATGTAGTGATCAATTATTTCAAGGAAGAAGAAAATCCTGAAGAGACGGTGGAGAAAATAGAAA
GCAGCGGAGCGCGCGCGATTGCCGTTCAAGGAGATGTCTCAAAAGAAGATGATGTAAAAGCGCTGATCAGACAGGCTGTT
GATTCATTCGGTTCCGTTGATGTGATGGTGAACAACGCAGGGGTGGAAAATGAAGTACCTTCTGAGGATTTGGCTCTAGA
GGACTGGAACCGCGTCATATCAACCAATTTGACGGGGATGTTTCTAGGATGCCGGGAAGCGATCGGCTATATGCTCGACC
ATAATATTAAAGGCTCGGTCATCAATATGTCCAGCGTCCATCAGCAAATCCCGTGGCCGCATTTTGTCCATTATGCGGCA
AGCAAGGGCGGGGCAAAACTGCTGACGGAAACCCTTGCCCTTGAATATGCCCCGAAAGGAATCCGGGTAAACGCGATCGG
CCCCGGTGCAATCGATACGCCGATTAACGCCGAAAAATTCGCTGATCCCGAATTGAAAAAAGGCGTTATTGAATTGATTC
CTATAGGGTATATCGGAAAGCCGGAGGAAGTCGCAGCCTGCGCGGCCTGGCTAGCATCCGAAGAAGCAAGCTATGTGACG
GGCCTGACGCTGTATGTAGACGGCGGGATGACAAAATACCCGGGATTCCAAGCGGGAAAAGGGTGA

Upstream 100 bases:

>100_bases
TGAAAAGCTTGCGGTTTTTTTGATTTTCGGAAGGATGCATGTTTAAGCGGTTGTGTGGAAACCTACTCAAAAGTGAGTTT
CAATAAGGAGGAATCAACCC

Downstream 100 bases:

>100_bases
AAAGAAGGCGGATGCCTTCTTTTCATCATAAGCCCATGAAAATTTACATAAGATTAATAGAAAGCAAAAGTGCTGTTTAC
ATAGCAATGATAGTGTAGGT

Product: glucose-1-dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 261

Protein sequence:

>261_residues
MYPSLEGKTVVITGAGTGLGKAMALRFGAEKANVVINYFKEEENPEETVEKIESSGARAIAVQGDVSKEDDVKALIRQAV
DSFGSVDVMVNNAGVENEVPSEDLALEDWNRVISTNLTGMFLGCREAIGYMLDHNIKGSVINMSSVHQQIPWPHFVHYAA
SKGGAKLLTETLALEYAPKGIRVNAIGPGAIDTPINAEKFADPELKKGVIELIPIGYIGKPEEVAACAAWLASEEASYVT
GLTLYVDGGMTKYPGFQAGKG

Sequences:

>Translated_261_residues
MYPSLEGKTVVITGAGTGLGKAMALRFGAEKANVVINYFKEEENPEETVEKIESSGARAIAVQGDVSKEDDVKALIRQAV
DSFGSVDVMVNNAGVENEVPSEDLALEDWNRVISTNLTGMFLGCREAIGYMLDHNIKGSVINMSSVHQQIPWPHFVHYAA
SKGGAKLLTETLALEYAPKGIRVNAIGPGAIDTPINAEKFADPELKKGVIELIPIGYIGKPEEVAACAAWLASEEASYVT
GLTLYVDGGMTKYPGFQAGKG
>Mature_261_residues
MYPSLEGKTVVITGAGTGLGKAMALRFGAEKANVVINYFKEEENPEETVEKIESSGARAIAVQGDVSKEDDVKALIRQAV
DSFGSVDVMVNNAGVENEVPSEDLALEDWNRVISTNLTGMFLGCREAIGYMLDHNIKGSVINMSSVHQQIPWPHFVHYAA
SKGGAKLLTETLALEYAPKGIRVNAIGPGAIDTPINAEKFADPELKKGVIELIPIGYIGKPEEVAACAAWLASEEASYVT
GLTLYVDGGMTKYPGFQAGKG

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI19923817, Length=257, Percent_Identity=33.0739299610895, Blast_Score=144, Evalue=6e-35,
Organism=Homo sapiens, GI15277342, Length=254, Percent_Identity=33.8582677165354, Blast_Score=136, Evalue=2e-32,
Organism=Homo sapiens, GI32483357, Length=246, Percent_Identity=32.520325203252, Blast_Score=124, Evalue=6e-29,
Organism=Homo sapiens, GI59889578, Length=198, Percent_Identity=37.8787878787879, Blast_Score=117, Evalue=1e-26,
Organism=Homo sapiens, GI5031737, Length=249, Percent_Identity=32.9317269076305, Blast_Score=114, Evalue=7e-26,
Organism=Homo sapiens, GI7705925, Length=265, Percent_Identity=27.1698113207547, Blast_Score=103, Evalue=1e-22,
Organism=Homo sapiens, GI126723750, Length=251, Percent_Identity=29.0836653386454, Blast_Score=99, Evalue=3e-21,
Organism=Homo sapiens, GI33667109, Length=190, Percent_Identity=34.2105263157895, Blast_Score=96, Evalue=5e-20,
Organism=Homo sapiens, GI10190704, Length=247, Percent_Identity=27.5303643724696, Blast_Score=95, Evalue=7e-20,
Organism=Homo sapiens, GI66933014, Length=250, Percent_Identity=30.8, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI40254992, Length=243, Percent_Identity=30.8641975308642, Blast_Score=92, Evalue=3e-19,
Organism=Homo sapiens, GI4504505, Length=246, Percent_Identity=30.0813008130081, Blast_Score=92, Evalue=5e-19,
Organism=Homo sapiens, GI31542939, Length=198, Percent_Identity=32.8282828282828, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI4503301, Length=206, Percent_Identity=31.0679611650485, Blast_Score=86, Evalue=4e-17,
Organism=Homo sapiens, GI4758504, Length=203, Percent_Identity=33.9901477832512, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI126723191, Length=183, Percent_Identity=30.0546448087432, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI4503817, Length=227, Percent_Identity=28.6343612334802, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI40254986, Length=193, Percent_Identity=29.5336787564767, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI4557649, Length=193, Percent_Identity=29.5336787564767, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI224922801, Length=174, Percent_Identity=31.6091954022989, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI109715829, Length=241, Percent_Identity=26.9709543568465, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI20149619, Length=213, Percent_Identity=27.6995305164319, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI83715985, Length=189, Percent_Identity=32.2751322751323, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI142976729, Length=196, Percent_Identity=27.5510204081633, Blast_Score=67, Evalue=1e-11,
Organism=Escherichia coli, GI1788459, Length=250, Percent_Identity=34, Blast_Score=152, Evalue=2e-38,
Organism=Escherichia coli, GI2367175, Length=244, Percent_Identity=39.344262295082, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI1790717, Length=247, Percent_Identity=32.7935222672065, Blast_Score=143, Evalue=1e-35,
Organism=Escherichia coli, GI1789208, Length=247, Percent_Identity=34.0080971659919, Blast_Score=140, Evalue=9e-35,
Organism=Escherichia coli, GI1787335, Length=247, Percent_Identity=31.9838056680162, Blast_Score=126, Evalue=1e-30,
Organism=Escherichia coli, GI87082100, Length=255, Percent_Identity=36.078431372549, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI1789378, Length=248, Percent_Identity=33.0645161290323, Blast_Score=124, Evalue=4e-30,
Organism=Escherichia coli, GI87082160, Length=248, Percent_Identity=32.258064516129, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1787905, Length=245, Percent_Identity=32.2448979591837, Blast_Score=117, Evalue=7e-28,
Organism=Escherichia coli, GI2367365, Length=246, Percent_Identity=31.3008130081301, Blast_Score=107, Evalue=5e-25,
Organism=Escherichia coli, GI1786812, Length=257, Percent_Identity=29.1828793774319, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1789057, Length=257, Percent_Identity=27.6264591439689, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1787820, Length=228, Percent_Identity=24.1228070175439, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1787526, Length=257, Percent_Identity=24.124513618677, Blast_Score=63, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI25147288, Length=252, Percent_Identity=33.7301587301587, Blast_Score=121, Evalue=4e-28,
Organism=Caenorhabditis elegans, GI17562904, Length=274, Percent_Identity=32.4817518248175, Blast_Score=120, Evalue=7e-28,
Organism=Caenorhabditis elegans, GI71994600, Length=247, Percent_Identity=30.7692307692308, Blast_Score=116, Evalue=9e-27,
Organism=Caenorhabditis elegans, GI115534694, Length=244, Percent_Identity=31.1475409836066, Blast_Score=115, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI17562910, Length=265, Percent_Identity=29.811320754717, Blast_Score=115, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI71994604, Length=246, Percent_Identity=29.2682926829268, Blast_Score=113, Evalue=9e-26,
Organism=Caenorhabditis elegans, GI17555706, Length=247, Percent_Identity=31.9838056680162, Blast_Score=112, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI17560676, Length=248, Percent_Identity=31.0483870967742, Blast_Score=112, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI193204405, Length=273, Percent_Identity=30.03663003663, Blast_Score=112, Evalue=3e-25,
Organism=Caenorhabditis elegans, GI17560150, Length=268, Percent_Identity=29.8507462686567, Blast_Score=109, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI17562990, Length=269, Percent_Identity=30.1115241635688, Blast_Score=109, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI17562906, Length=270, Percent_Identity=29.6296296296296, Blast_Score=106, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI72000259, Length=270, Percent_Identity=27.4074074074074, Blast_Score=105, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI17561402, Length=252, Percent_Identity=29.7619047619048, Blast_Score=105, Evalue=3e-23,
Organism=Caenorhabditis elegans, GI17560332, Length=273, Percent_Identity=28.5714285714286, Blast_Score=104, Evalue=4e-23,
Organism=Caenorhabditis elegans, GI17559104, Length=269, Percent_Identity=27.8810408921933, Blast_Score=103, Evalue=6e-23,
Organism=Caenorhabditis elegans, GI17544670, Length=265, Percent_Identity=26.7924528301887, Blast_Score=103, Evalue=9e-23,
Organism=Caenorhabditis elegans, GI17562908, Length=280, Percent_Identity=28.5714285714286, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17531453, Length=281, Percent_Identity=29.1814946619217, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17536651, Length=256, Percent_Identity=28.515625, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17538480, Length=278, Percent_Identity=26.978417266187, Blast_Score=100, Evalue=8e-22,
Organism=Caenorhabditis elegans, GI17536025, Length=254, Percent_Identity=28.3464566929134, Blast_Score=98, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI17551412, Length=272, Percent_Identity=27.2058823529412, Blast_Score=97, Evalue=7e-21,
Organism=Caenorhabditis elegans, GI17563726, Length=262, Percent_Identity=28.2442748091603, Blast_Score=97, Evalue=7e-21,
Organism=Caenorhabditis elegans, GI17538486, Length=274, Percent_Identity=27.007299270073, Blast_Score=93, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17560220, Length=273, Percent_Identity=28.5714285714286, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI71982365, Length=190, Percent_Identity=31.0526315789474, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17565030, Length=273, Percent_Identity=27.1062271062271, Blast_Score=88, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI17564282, Length=193, Percent_Identity=28.4974093264249, Blast_Score=85, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17561272, Length=251, Percent_Identity=31.8725099601594, Blast_Score=84, Evalue=6e-17,
Organism=Caenorhabditis elegans, GI193203115, Length=196, Percent_Identity=31.1224489795918, Blast_Score=84, Evalue=7e-17,
Organism=Caenorhabditis elegans, GI193203117, Length=196, Percent_Identity=31.1224489795918, Blast_Score=84, Evalue=8e-17,
Organism=Caenorhabditis elegans, GI17568967, Length=200, Percent_Identity=29, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17538182, Length=260, Percent_Identity=28.0769230769231, Blast_Score=77, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI17558628, Length=193, Percent_Identity=31.6062176165803, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17567345, Length=203, Percent_Identity=28.5714285714286, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17508651, Length=254, Percent_Identity=26.3779527559055, Blast_Score=70, Evalue=1e-12,
Organism=Saccharomyces cerevisiae, GI6324126, Length=249, Percent_Identity=26.9076305220884, Blast_Score=94, Evalue=2e-20,
Organism=Saccharomyces cerevisiae, GI6322861, Length=195, Percent_Identity=33.3333333333333, Blast_Score=84, Evalue=2e-17,
Organism=Saccharomyces cerevisiae, GI6323882, Length=204, Percent_Identity=28.4313725490196, Blast_Score=77, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24644339, Length=250, Percent_Identity=35.6, Blast_Score=140, Evalue=1e-33,
Organism=Drosophila melanogaster, GI28571526, Length=251, Percent_Identity=34.2629482071713, Blast_Score=139, Evalue=3e-33,
Organism=Drosophila melanogaster, GI21357041, Length=259, Percent_Identity=33.5907335907336, Blast_Score=137, Evalue=9e-33,
Organism=Drosophila melanogaster, GI23397609, Length=250, Percent_Identity=35.2, Blast_Score=134, Evalue=8e-32,
Organism=Drosophila melanogaster, GI24639444, Length=248, Percent_Identity=33.4677419354839, Blast_Score=127, Evalue=8e-30,
Organism=Drosophila melanogaster, GI21355319, Length=251, Percent_Identity=28.6852589641434, Blast_Score=112, Evalue=2e-25,
Organism=Drosophila melanogaster, GI24644337, Length=215, Percent_Identity=32.5581395348837, Blast_Score=108, Evalue=3e-24,
Organism=Drosophila melanogaster, GI24643142, Length=251, Percent_Identity=27.0916334661355, Blast_Score=103, Evalue=8e-23,
Organism=Drosophila melanogaster, GI21357673, Length=252, Percent_Identity=28.5714285714286, Blast_Score=91, Evalue=6e-19,
Organism=Drosophila melanogaster, GI17737361, Length=257, Percent_Identity=29.5719844357977, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI18859837, Length=241, Percent_Identity=30.2904564315353, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI24649181, Length=197, Percent_Identity=31.9796954314721, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI281364892, Length=194, Percent_Identity=28.8659793814433, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI281364494, Length=208, Percent_Identity=31.7307692307692, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24640492, Length=215, Percent_Identity=26.9767441860465, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24584752, Length=217, Percent_Identity=28.110599078341, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24584744, Length=207, Percent_Identity=28.0193236714976, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI28574402, Length=207, Percent_Identity=28.0193236714976, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24665243, Length=209, Percent_Identity=30.622009569378, Blast_Score=68, Evalue=8e-12,
Organism=Drosophila melanogaster, GI221331218, Length=209, Percent_Identity=30.622009569378, Blast_Score=68, Evalue=8e-12,
Organism=Drosophila melanogaster, GI24648944, Length=199, Percent_Identity=26.1306532663317, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24665247, Length=212, Percent_Identity=30.188679245283, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI221331216, Length=212, Percent_Identity=30.188679245283, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24584748, Length=213, Percent_Identity=27.2300469483568, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI161076933, Length=213, Percent_Identity=27.2300469483568, Blast_Score=65, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: =1.1.1.47 [H]

Molecular weight: Translated: 27850; Mature: 27850

Theoretical pI: Translated: 4.57; Mature: 4.57

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYPSLEGKTVVITGAGTGLGKAMALRFGAEKANVVINYFKEEENPEETVEKIESSGARAI
CCCCCCCCEEEEEECCCCCCHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEE
AVQGDVSKEDDVKALIRQAVDSFGSVDVMVNNAGVENEVPSEDLALEDWNRVISTNLTGM
EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCHHH
FLGCREAIGYMLDHNIKGSVINMSSVHQQIPWPHFVHYAASKGGAKLLTETLALEYAPKG
HHHHHHHHHHHHCCCCCCCEEEHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCC
IRVNAIGPGAIDTPINAEKFADPELKKGVIELIPIGYIGKPEEVAACAAWLASEEASYVT
EEEEEECCCCCCCCCCHHHCCCHHHHCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEE
GLTLYVDGGMTKYPGFQAGKG
EEEEEECCCCCCCCCCCCCCC
>Mature Secondary Structure
MYPSLEGKTVVITGAGTGLGKAMALRFGAEKANVVINYFKEEENPEETVEKIESSGARAI
CCCCCCCCEEEEEECCCCCCHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEE
AVQGDVSKEDDVKALIRQAVDSFGSVDVMVNNAGVENEVPSEDLALEDWNRVISTNLTGM
EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCHHH
FLGCREAIGYMLDHNIKGSVINMSSVHQQIPWPHFVHYAASKGGAKLLTETLALEYAPKG
HHHHHHHHHHHHCCCCCCCEEEHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCC
IRVNAIGPGAIDTPINAEKFADPELKKGVIELIPIGYIGKPEEVAACAAWLASEEASYVT
EEEEEECCCCCCCCCCHHHCCCHHHHCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEE
GLTLYVDGGMTKYPGFQAGKG
EEEEEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3082854; 8969502; 9384377 [H]