Click here to switch to the map view.

The map label for this gene is rocC

Identifier: 52786295

GI number: 52786295

Start: 2476684

End: 2477202

Strand: Reverse

Name: rocC

Synonym: BLi02557

Alternate gene names: NA

Gene position: 2477202-2476684 (Counterclockwise)

Preceding gene: 52786296

Following gene: 52786294

Centisome position: 58.66

GC content: 49.52

Gene sequence:

>519_bases
ATGGGGAAATTAAAAATCATAAAACGGCTTGTGCCGGCGCTGATCATTGCCGTTTTTGCAGCGGCATGCCTGATTCCTTA
TCAGACCGCCGTCGTGTTCGAGAAAGAGGACAGCGGCGAGATCATCGCTTTTCTTCCCCTCCAAAAGAAGAAAAGCTTTG
ATGTGGTCTATACGCATTCCATCCATCGGACAGAAGTGATCGAATCGTATGTGTGGGAAAAAGGGATGATTCGGCAGACC
GCTCTGACCTATCATGATCCGGCCGTCGGAATGCCCGCAAACGCAGAACAAGGTGAAAGGCTCGACATCAAAAACGGCGT
CTACACCATTTCGAACATGAAGAGGACCTTTCCGTTCATCGATATGCGGATCGGCAGGGTGAGGGCGAATCACAGGATCA
AGTATTCAGGCGCTGAACATGAGTTAAAGCGGTACATCCGTCCCGGCACATGGACAAGGATGAGTGTCCGAAAACTAAAT
GTCTTGCAACAACTGAGGGGAGTGAAGATCAATGACTGA

Upstream 100 bases:

>100_bases
ACCAAGGAAGATAAGCGATGAATAAGCCCGGGCAATCGATAGACCGTTGCAATGAAACATCGGTCTATCGTTTTTCTATT
CGGCAGGGGATATGGAAAAA

Downstream 100 bases:

>100_bases
GCAGCTTTCGGAAAAAGATCAGCAGGAACTGCTGGAGAAATACGATCCTGAAGCGGGAACGAGAAAGCTCAAAGGATTGA
CAGGGGCCATTGCATTTGCC

Product: RocC

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 172; Mature: 171

Protein sequence:

>172_residues
MGKLKIIKRLVPALIIAVFAAACLIPYQTAVVFEKEDSGEIIAFLPLQKKKSFDVVYTHSIHRTEVIESYVWEKGMIRQT
ALTYHDPAVGMPANAEQGERLDIKNGVYTISNMKRTFPFIDMRIGRVRANHRIKYSGAEHELKRYIRPGTWTRMSVRKLN
VLQQLRGVKIND

Sequences:

>Translated_172_residues
MGKLKIIKRLVPALIIAVFAAACLIPYQTAVVFEKEDSGEIIAFLPLQKKKSFDVVYTHSIHRTEVIESYVWEKGMIRQT
ALTYHDPAVGMPANAEQGERLDIKNGVYTISNMKRTFPFIDMRIGRVRANHRIKYSGAEHELKRYIRPGTWTRMSVRKLN
VLQQLRGVKIND
>Mature_171_residues
GKLKIIKRLVPALIIAVFAAACLIPYQTAVVFEKEDSGEIIAFLPLQKKKSFDVVYTHSIHRTEVIESYVWEKGMIRQTA
LTYHDPAVGMPANAEQGERLDIKNGVYTISNMKRTFPFIDMRIGRVRANHRIKYSGAEHELKRYIRPGTWTRMSVRKLNV
LQQLRGVKIND

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19772; Mature: 19640

Theoretical pI: Translated: 10.52; Mature: 10.52

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKLKIIKRLVPALIIAVFAAACLIPYQTAVVFEKEDSGEIIAFLPLQKKKSFDVVYTHS
CCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEECCCCCCCCEEEECC
IHRTEVIESYVWEKGMIRQTALTYHDPAVGMPANAEQGERLDIKNGVYTISNMKRTFPFI
CHHHHHHHHHHHCCCCHHHHHEEECCCCCCCCCCCCCCCEEECCCCEEEECCCHHHCCCH
DMRIGRVRANHRIKYSGAEHELKRYIRPGTWTRMSVRKLNVLQQLRGVKIND
HEEEEEEECCCEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
GKLKIIKRLVPALIIAVFAAACLIPYQTAVVFEKEDSGEIIAFLPLQKKKSFDVVYTHS
CHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEECCCCCCCCEEEECC
IHRTEVIESYVWEKGMIRQTALTYHDPAVGMPANAEQGERLDIKNGVYTISNMKRTFPFI
CHHHHHHHHHHHCCCCHHHHHEEECCCCCCCCCCCCCCCEEECCCCEEEECCCHHHCCCH
DMRIGRVRANHRIKYSGAEHELKRYIRPGTWTRMSVRKLNVLQQLRGVKIND
HEEEEEEECCCEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA