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The map label for this gene is ydgC [H]

Identifier: 52786253

GI number: 52786253

Start: 2440473

End: 2441078

Strand: Direct

Name: ydgC [H]

Synonym: BLi02514

Alternate gene names: 52786253

Gene position: 2440473-2441078 (Clockwise)

Preceding gene: 52786252

Following gene: 52786254

Centisome position: 57.79

GC content: 47.36

Gene sequence:

>606_bases
GTGGGAATTGAAAAGGGCCGCAAAGGCAAACAAAGCCGGAAGCGGCTGCTCGAGGTCGCTGCAAACGAATTTGCAAACCG
GGGATTCCATGAGACAAAAGTGAGTACGATTGTGAAAAGAGCTGGACTGACTCAGCCTTCTTTCTACCTATATTTCCCAA
GCAAGGACGCCATCTATGACGAGCTGATCAATGGCTTTCACGCGAACTTAAAAAATCTGATCGAATCGTTCCGTTTAGAG
AAAGGAATCGAGAAAAAACACGTATCAAAACGGGTAACGGCCGCTGTAGAGGCTGTATTTCGATTTTTGGCAGAGGACCC
CGATTTGACTCGCATCGGTTTTTTTCTCAGCCCTGAAGCAGGCGAAATGAAAAAAGATTTAACGCTCGCCTTGAAAGAAA
ACTTGAAAGCAGAGCAGGAGCTCGGCTACTTCCGATCCGACCTGGAAATGGAGACCGTTGCTGAATGTCTGACAGGCATG
ATTGAGCACCTTGCCGATATCTATTTGCTTGACGGATCAAAGGACCCCTCAAGTCTCGCAAAACAAATCACGGATCTTTT
GATCCACGGAATGCTCGTAAATCCGCAGCATCCAGAAACGGAGTGA

Upstream 100 bases:

>100_bases
GCCTGCAAAAGCTTAATTTTATTGACATCAAGAAGGGCTGCATGAAATAATACTTGTGAGTAATGTTACTCACAAGTATT
ATTATTTGGAGGCGGATGAT

Downstream 100 bases:

>100_bases
ACACAGTGGCATTTATTTTCTTAAAAGCAGGGCTGGCGGCATTTATGCTGACCGGAGGCGTAATCAAGGTGCTGCACGTT
CCTTTTCAAGTCGAACATTG

Product: YdgC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 201; Mature: 200

Protein sequence:

>201_residues
MGIEKGRKGKQSRKRLLEVAANEFANRGFHETKVSTIVKRAGLTQPSFYLYFPSKDAIYDELINGFHANLKNLIESFRLE
KGIEKKHVSKRVTAAVEAVFRFLAEDPDLTRIGFFLSPEAGEMKKDLTLALKENLKAEQELGYFRSDLEMETVAECLTGM
IEHLADIYLLDGSKDPSSLAKQITDLLIHGMLVNPQHPETE

Sequences:

>Translated_201_residues
MGIEKGRKGKQSRKRLLEVAANEFANRGFHETKVSTIVKRAGLTQPSFYLYFPSKDAIYDELINGFHANLKNLIESFRLE
KGIEKKHVSKRVTAAVEAVFRFLAEDPDLTRIGFFLSPEAGEMKKDLTLALKENLKAEQELGYFRSDLEMETVAECLTGM
IEHLADIYLLDGSKDPSSLAKQITDLLIHGMLVNPQHPETE
>Mature_200_residues
GIEKGRKGKQSRKRLLEVAANEFANRGFHETKVSTIVKRAGLTQPSFYLYFPSKDAIYDELINGFHANLKNLIESFRLEK
GIEKKHVSKRVTAAVEAVFRFLAEDPDLTRIGFFLSPEAGEMKKDLTLALKENLKAEQELGYFRSDLEMETVAECLTGMI
EHLADIYLLDGSKDPSSLAKQITDLLIHGMLVNPQHPETE

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 22699; Mature: 22568

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGIEKGRKGKQSRKRLLEVAANEFANRGFHETKVSTIVKRAGLTQPSFYLYFPSKDAIYD
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCHHHHH
ELINGFHANLKNLIESFRLEKGIEKKHVSKRVTAAVEAVFRFLAEDPDLTRIGFFLSPEA
HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCH
GEMKKDLTLALKENLKAEQELGYFRSDLEMETVAECLTGMIEHLADIYLLDGSKDPSSLA
HHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHEEEECCCCCHHHHH
KQITDLLIHGMLVNPQHPETE
HHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
GIEKGRKGKQSRKRLLEVAANEFANRGFHETKVSTIVKRAGLTQPSFYLYFPSKDAIYD
CCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCHHHHH
ELINGFHANLKNLIESFRLEKGIEKKHVSKRVTAAVEAVFRFLAEDPDLTRIGFFLSPEA
HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCH
GEMKKDLTLALKENLKAEQELGYFRSDLEMETVAECLTGMIEHLADIYLLDGSKDPSSLA
HHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHEEEECCCCCHHHHH
KQITDLLIHGMLVNPQHPETE
HHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]