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The map label for this gene is ypsC [H]

Identifier: 52786097

GI number: 52786097

Start: 2300564

End: 2301715

Strand: Reverse

Name: ypsC [H]

Synonym: BLi02353

Alternate gene names: 52786097

Gene position: 2301715-2300564 (Counterclockwise)

Preceding gene: 52786098

Following gene: 52786095

Centisome position: 54.51

GC content: 49.05

Gene sequence:

>1152_bases
ATGAAAACCTATACATTAATCGCAACAGCGCCGATGGGAATTGAAGCGATCGTCGCCAAAGAGGTGCGCGACCTTGGATA
TGATTGTACAGTTGACAACGGTAAAGTCGTGTTTGAAGGCGATGCCCTCGCCATCTGCAGAGCCAATCTGTGGCTGAGAA
CCGCTGACAGGGTGAAAGTGCAGGCTGCCGAATTTATAGCCAAGACCTTTGACGAGCTATTTGAGAAGACAAAAGCGATC
GACTGGAGCGCCTATCTTCCTGAACACGCGTCATTCCCCGTGACGGGAAAGTCTGTTAAATCAGTGCTCGCAAGCGTGCC
GGACTGCCAGCGCATCGTCAAAAAAGCGATCGCCGAGAAGCTGAAATCAGAATATCAGACACAGGGCGAGTGGCTTGAGG
AAACAGGGCCGGAATACAAAATTGAAGTCTCTCTTTTAAAAGACAAAGCGGTCATAACGCTTGATTCATCCGGAGCCGGG
CTTCATAAACGGGGATATCGAACCGGCCAAGGGGAAGCGCCGCTGAAAGAAACCCTTGCTGCAGCTTTGATTCTATTGAC
AAATTGGACGCCTGACAGGCCTTTCGTCGATCCGTTTTGCGGTTCGGGTACGATACCGATCGAAGCCGCTTTGATCGGCC
AAAATATCGCCCCGGGTTTCAACAGGGATTTTGCATCTGAAAGATGGGAATGGATCGGTAAAGAAGTGTGGGATCAAGCG
AGGCTGGAAGTCGAAGAAAAAGCGAATTATGATCAGCCGCTTTCAATCTCGGGGTATGACCTGGATCATCGCATGATCGA
AATCGCCAAGGCAAACGCCGAGGAAGCTGGACTCGCCGATTTCATCGAATTTAAGCAAATGCAGGTAAAGGATTTTCGGA
CGAAAGAGGAATACGGCGTAATTGTCGGAAATCCGCCGTACGGGGAACGCCTCGGTGAAAAGAAAGCAGTCGAAGCCATG
TATAAGGATATGGGCAAAGCATTTGCCGAGCTTGATACATGGTCTGTCTACATGCTGACATCAAACGAGCGTTTTGAAGA
GTGCTACGGGAAAAAAGCAACGAAAAAACGGAAGCTCTTTAACGGTTTTATTAAGACGGACTATTACCAGTATTGGGGGA
AAAGGCCGCCAAAACCGAACAAAGAAAAGTGA

Upstream 100 bases:

>100_bases
CAGAACGTTACACACTATTATGATGATGACAATGTATAAGCTCTCCGCAGGTAGGAGAGCTTTTATCATGTAAAAAACAT
ACATAAAAACAGGTGATATA

Downstream 100 bases:

>100_bases
AGTTTAAAGGCTGCCATGTAAAACGGCAGCCTTTTTTCTTTCCATAGCCGGAACCGCTGAACGGCGTATTGAATTCGCGC
CCGCTCGGAGTTAGCCCCTT

Product: YpsC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 383; Mature: 383

Protein sequence:

>383_residues
MKTYTLIATAPMGIEAIVAKEVRDLGYDCTVDNGKVVFEGDALAICRANLWLRTADRVKVQAAEFIAKTFDELFEKTKAI
DWSAYLPEHASFPVTGKSVKSVLASVPDCQRIVKKAIAEKLKSEYQTQGEWLEETGPEYKIEVSLLKDKAVITLDSSGAG
LHKRGYRTGQGEAPLKETLAAALILLTNWTPDRPFVDPFCGSGTIPIEAALIGQNIAPGFNRDFASERWEWIGKEVWDQA
RLEVEEKANYDQPLSISGYDLDHRMIEIAKANAEEAGLADFIEFKQMQVKDFRTKEEYGVIVGNPPYGERLGEKKAVEAM
YKDMGKAFAELDTWSVYMLTSNERFEECYGKKATKKRKLFNGFIKTDYYQYWGKRPPKPNKEK

Sequences:

>Translated_383_residues
MKTYTLIATAPMGIEAIVAKEVRDLGYDCTVDNGKVVFEGDALAICRANLWLRTADRVKVQAAEFIAKTFDELFEKTKAI
DWSAYLPEHASFPVTGKSVKSVLASVPDCQRIVKKAIAEKLKSEYQTQGEWLEETGPEYKIEVSLLKDKAVITLDSSGAG
LHKRGYRTGQGEAPLKETLAAALILLTNWTPDRPFVDPFCGSGTIPIEAALIGQNIAPGFNRDFASERWEWIGKEVWDQA
RLEVEEKANYDQPLSISGYDLDHRMIEIAKANAEEAGLADFIEFKQMQVKDFRTKEEYGVIVGNPPYGERLGEKKAVEAM
YKDMGKAFAELDTWSVYMLTSNERFEECYGKKATKKRKLFNGFIKTDYYQYWGKRPPKPNKEK
>Mature_383_residues
MKTYTLIATAPMGIEAIVAKEVRDLGYDCTVDNGKVVFEGDALAICRANLWLRTADRVKVQAAEFIAKTFDELFEKTKAI
DWSAYLPEHASFPVTGKSVKSVLASVPDCQRIVKKAIAEKLKSEYQTQGEWLEETGPEYKIEVSLLKDKAVITLDSSGAG
LHKRGYRTGQGEAPLKETLAAALILLTNWTPDRPFVDPFCGSGTIPIEAALIGQNIAPGFNRDFASERWEWIGKEVWDQA
RLEVEEKANYDQPLSISGYDLDHRMIEIAKANAEEAGLADFIEFKQMQVKDFRTKEEYGVIVGNPPYGERLGEKKAVEAM
YKDMGKAFAELDTWSVYMLTSNERFEECYGKKATKKRKLFNGFIKTDYYQYWGKRPPKPNKEK

Specific function: Unknown

COG id: COG0116

COG function: function code L; Predicted N6-adenine-specific DNA methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 THUMP domain [H]

Homologues:

Organism=Escherichia coli, GI1787181, Length=347, Percent_Identity=31.1239193083574, Blast_Score=179, Evalue=2e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002052
- InterPro:   IPR000241
- InterPro:   IPR004114 [H]

Pfam domain/function: PF02926 THUMP; PF01170 UPF0020 [H]

EC number: NA

Molecular weight: Translated: 43237; Mature: 43237

Theoretical pI: Translated: 5.66; Mature: 5.66

Prosite motif: PS51165 THUMP ; PS00092 N6_MTASE ; PS01261 UPF0020

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTYTLIATAPMGIEAIVAKEVRDLGYDCTVDNGKVVFEGDALAICRANLWLRTADRVKV
CCEEEEEEECCCCHHHHHHHHHHHCCCEEEECCCEEEEECCEEEEEECCCEEECCHHHHH
QAAEFIAKTFDELFEKTKAIDWSAYLPEHASFPVTGKSVKSVLASVPDCQRIVKKAIAEK
HHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHH
LKSEYQTQGEWLEETGPEYKIEVSLLKDKAVITLDSSGAGLHKRGYRTGQGEAPLKETLA
HHHHHHHCCCHHHHCCCCEEEEEEEECCCEEEEECCCCCCCHHCCCCCCCCCCCHHHHHH
AALILLTNWTPDRPFVDPFCGSGTIPIEAALIGQNIAPGFNRDFASERWEWIGKEVWDQA
HHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHH
RLEVEEKANYDQPLSISGYDLDHRMIEIAKANAEEAGLADFIEFKQMQVKDFRTKEEYGV
HHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHCEE
IVGNPPYGERLGEKKAVEAMYKDMGKAFAELDTWSVYMLTSNERFEECYGKKATKKRKLF
EECCCCCHHHHCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCHHHHHHHHH
NGFIKTDYYQYWGKRPPKPNKEK
HHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MKTYTLIATAPMGIEAIVAKEVRDLGYDCTVDNGKVVFEGDALAICRANLWLRTADRVKV
CCEEEEEEECCCCHHHHHHHHHHHCCCEEEECCCEEEEECCEEEEEECCCEEECCHHHHH
QAAEFIAKTFDELFEKTKAIDWSAYLPEHASFPVTGKSVKSVLASVPDCQRIVKKAIAEK
HHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHH
LKSEYQTQGEWLEETGPEYKIEVSLLKDKAVITLDSSGAGLHKRGYRTGQGEAPLKETLA
HHHHHHHCCCHHHHCCCCEEEEEEEECCCEEEEECCCCCCCHHCCCCCCCCCCCHHHHHH
AALILLTNWTPDRPFVDPFCGSGTIPIEAALIGQNIAPGFNRDFASERWEWIGKEVWDQA
HHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHH
RLEVEEKANYDQPLSISGYDLDHRMIEIAKANAEEAGLADFIEFKQMQVKDFRTKEEYGV
HHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHCEE
IVGNPPYGERLGEKKAVEAMYKDMGKAFAELDTWSVYMLTSNERFEECYGKKATKKRKLF
EECCCCCHHHHCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCHHHHHHHHH
NGFIKTDYYQYWGKRPPKPNKEK
HHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377; 2423526 [H]