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The map label for this gene is yplP [H]

Identifier: 52786060

GI number: 52786060

Start: 2267351

End: 2268352

Strand: Direct

Name: yplP [H]

Synonym: BLi02316

Alternate gene names: 52786060

Gene position: 2267351-2268352 (Clockwise)

Preceding gene: 52786052

Following gene: 52786061

Centisome position: 53.7

GC content: 45.81

Gene sequence:

>1002_bases
ATGATTAAACACACATATCCGTCCGTAGGTTTCTCCGAGCTGATCGGGGAATGCGATTCCTTTTTGCAAACGAAAAACAG
AGCGATACAATTTGCAGCATCTTCCCATCCGATTCTGATTCATGGGGAAACAGGCACAGGCAAAGAGCTGTTCGCCAAAG
CCATTCATTCCGGATCATCTTTCAAGGATGATCCCTTCACACATGTAAGCTGCAGCACGCTGGATGAAGATGAAACGGCT
GAAGATTTTTTTCTTTCAGAGCTGAATGAGCCCGGAACCTTGTTTCTCGACGAAGTGTGGGGTCTATCCTTGCATCTCCA
GGGCAGGCTTTTGGCAGCCATTGAAAAAGGGATGCAAAAAAGATTGATCACCTCTTCAAGCATGCCTCTCATTGAACGGA
TTGATAGCAGCGAATTCCGCAAGGACCTGTACTACAGGCTCAATGTGCTCGACCTTCCGCTTCCCTCTCTTAGTGAACGG
CGAAGCGACATCCCCCTTCTCGTGCATCATTTTTTAAAAAGCGGGGATCATGACATATATGTCGAACCGGTCGTTTGGAA
AGCTTTAGAGCAGCATGAGTTTGAGGGGAACGTCAGAGAACTCAAAAACATGACGGATTATATGATAACCGTCTCAGACG
GAAAAACGATTCAGCTTTACGACACACCGCCCTCGTTAAGAGAACAAATCAAAAAAAAGAAGCCTAAGGACAAAAAAACG
GCTTCGGCATCACTTACCTTAATGGAAAAAGAGGAGTTTGCGTTTTTGCTCGATGCAATCAAGCAATTAAATGAAAAAGG
AGAGCCTGCCAGCCGCAGGGTTCTGTCCGAGCTGAGCAAAAGCGGCAAGTCGGAGCTTACACCCCAGCAAGTGAGAAGCA
GATTGGATTATTTGGAAAAAAGAGAGTTTATTACAAAGGGCCGCGGAAGAGCCGGGACAAAAATCACGCTTGAAGGCCTC
CGCTTTTTAAGCTCTTTAAAGCATCACATTATTCAAGATTAG

Upstream 100 bases:

>100_bases
TCTTAATGTGCAGGCCACATGCACTTTTTTTCAAAAAACTCTTTATTTGTTCTAATTGGGTGTTATAATAGAACCAATTA
GAACCAAAAGGAGAGCCGCC

Downstream 100 bases:

>100_bases
AAAGGGTGTCTTGGTATGTACACGATTAAAGAAGAAATTGCTAATGCAATAACCCATGGACTCGGCGTCCTCCTGTCAAT
ACCTGCCATCGTATTTTTGG

Product: YplP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 333; Mature: 333

Protein sequence:

>333_residues
MIKHTYPSVGFSELIGECDSFLQTKNRAIQFAASSHPILIHGETGTGKELFAKAIHSGSSFKDDPFTHVSCSTLDEDETA
EDFFLSELNEPGTLFLDEVWGLSLHLQGRLLAAIEKGMQKRLITSSSMPLIERIDSSEFRKDLYYRLNVLDLPLPSLSER
RSDIPLLVHHFLKSGDHDIYVEPVVWKALEQHEFEGNVRELKNMTDYMITVSDGKTIQLYDTPPSLREQIKKKKPKDKKT
ASASLTLMEKEEFAFLLDAIKQLNEKGEPASRRVLSELSKSGKSELTPQQVRSRLDYLEKREFITKGRGRAGTKITLEGL
RFLSSLKHHIIQD

Sequences:

>Translated_333_residues
MIKHTYPSVGFSELIGECDSFLQTKNRAIQFAASSHPILIHGETGTGKELFAKAIHSGSSFKDDPFTHVSCSTLDEDETA
EDFFLSELNEPGTLFLDEVWGLSLHLQGRLLAAIEKGMQKRLITSSSMPLIERIDSSEFRKDLYYRLNVLDLPLPSLSER
RSDIPLLVHHFLKSGDHDIYVEPVVWKALEQHEFEGNVRELKNMTDYMITVSDGKTIQLYDTPPSLREQIKKKKPKDKKT
ASASLTLMEKEEFAFLLDAIKQLNEKGEPASRRVLSELSKSGKSELTPQQVRSRLDYLEKREFITKGRGRAGTKITLEGL
RFLSSLKHHIIQD
>Mature_333_residues
MIKHTYPSVGFSELIGECDSFLQTKNRAIQFAASSHPILIHGETGTGKELFAKAIHSGSSFKDDPFTHVSCSTLDEDETA
EDFFLSELNEPGTLFLDEVWGLSLHLQGRLLAAIEKGMQKRLITSSSMPLIERIDSSEFRKDLYYRLNVLDLPLPSLSER
RSDIPLLVHHFLKSGDHDIYVEPVVWKALEQHEFEGNVRELKNMTDYMITVSDGKTIQLYDTPPSLREQIKKKKPKDKKT
ASASLTLMEKEEFAFLLDAIKQLNEKGEPASRRVLSELSKSGKSELTPQQVRSRLDYLEKREFITKGRGRAGTKITLEGL
RFLSSLKHHIIQD

Specific function: Unknown

COG id: COG1221

COG function: function code KT; Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI1789233, Length=300, Percent_Identity=31.3333333333333, Blast_Score=142, Evalue=3e-35,
Organism=Escherichia coli, GI1790437, Length=260, Percent_Identity=31.5384615384615, Blast_Score=125, Evalue=4e-30,
Organism=Escherichia coli, GI1788550, Length=234, Percent_Identity=34.1880341880342, Blast_Score=125, Evalue=5e-30,
Organism=Escherichia coli, GI1790299, Length=280, Percent_Identity=31.0714285714286, Blast_Score=122, Evalue=3e-29,
Organism=Escherichia coli, GI1788905, Length=219, Percent_Identity=32.8767123287671, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1789087, Length=288, Percent_Identity=30.5555555555556, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI87082117, Length=246, Percent_Identity=31.3008130081301, Blast_Score=115, Evalue=6e-27,
Organism=Escherichia coli, GI87082152, Length=240, Percent_Identity=31.25, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1786524, Length=244, Percent_Identity=31.5573770491803, Blast_Score=105, Evalue=5e-24,
Organism=Escherichia coli, GI1787583, Length=238, Percent_Identity=30.2521008403361, Blast_Score=105, Evalue=6e-24,
Organism=Escherichia coli, GI87081872, Length=269, Percent_Identity=28.996282527881, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI87081858, Length=252, Percent_Identity=29.7619047619048, Blast_Score=95, Evalue=7e-21,
Organism=Escherichia coli, GI1789828, Length=302, Percent_Identity=26.158940397351, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR002078
- InterPro:   IPR013668
- InterPro:   IPR011991 [H]

Pfam domain/function: PF08461 HTH_12; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 37820; Mature: 37820

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS00675 SIGMA54_INTERACT_1 ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKHTYPSVGFSELIGECDSFLQTKNRAIQFAASSHPILIHGETGTGKELFAKAIHSGSS
CCCCCCCCCCHHHHHHHHHHHHHHHHHHEEEECCCCCEEEECCCCCCHHHHHHHHHCCCC
FKDDPFTHVSCSTLDEDETAEDFFLSELNEPGTLFLDEVWGLSLHLQGRLLAAIEKGMQK
CCCCCCCEEECCCCCCCCHHHHHHHHHCCCCCCEEHHHHCCCEEEECHHHHHHHHHHHHH
RLITSSSMPLIERIDSSEFRKDLYYRLNVLDLPLPSLSERRSDIPLLVHHFLKSGDHDIY
HHHCCCCCHHHHHCCHHHHHHHHHHHEEEEECCCCCHHHHCCCCHHHHHHHHHCCCCCEE
VEPVVWKALEQHEFEGNVRELKNMTDYMITVSDGKTIQLYDTPPSLREQIKKKKPKDKKT
ECHHHHHHHHHHHCCCHHHHHHCCHHEEEEECCCCEEEEECCCHHHHHHHHHCCCCCHHH
ASASLTLMEKEEFAFLLDAIKQLNEKGEPASRRVLSELSKSGKSELTPQQVRSRLDYLEK
HHHEEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
REFITKGRGRAGTKITLEGLRFLSSLKHHIIQD
HHHHHCCCCCCCCEEEHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIKHTYPSVGFSELIGECDSFLQTKNRAIQFAASSHPILIHGETGTGKELFAKAIHSGSS
CCCCCCCCCCHHHHHHHHHHHHHHHHHHEEEECCCCCEEEECCCCCCHHHHHHHHHCCCC
FKDDPFTHVSCSTLDEDETAEDFFLSELNEPGTLFLDEVWGLSLHLQGRLLAAIEKGMQK
CCCCCCCEEECCCCCCCCHHHHHHHHHCCCCCCEEHHHHCCCEEEECHHHHHHHHHHHHH
RLITSSSMPLIERIDSSEFRKDLYYRLNVLDLPLPSLSERRSDIPLLVHHFLKSGDHDIY
HHHCCCCCHHHHHCCHHHHHHHHHHHEEEEECCCCCHHHHCCCCHHHHHHHHHCCCCCEE
VEPVVWKALEQHEFEGNVRELKNMTDYMITVSDGKTIQLYDTPPSLREQIKKKKPKDKKT
ECHHHHHHHHHHHCCCHHHHHHCCHHEEEEECCCCEEEEECCCHHHHHHHHHCCCCCHHH
ASASLTLMEKEEFAFLLDAIKQLNEKGEPASRRVLSELSKSGKSELTPQQVRSRLDYLEK
HHHEEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
REFITKGRGRAGTKITLEGLRFLSSLKHHIIQD
HHHHHCCCCCCCCEEEHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]