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The map label for this gene is yobU [H]

Identifier: 52785945

GI number: 52785945

Start: 2158113

End: 2158622

Strand: Reverse

Name: yobU [H]

Synonym: BLi02196

Alternate gene names: 52785945

Gene position: 2158622-2158113 (Counterclockwise)

Preceding gene: 52785946

Following gene: 52785944

Centisome position: 51.12

GC content: 44.71

Gene sequence:

>510_bases
ATGGGCGGCGGCGCAAACGGAAGGCGGGCAGGGAAGATGAGCTTTTCTCATTTCGAAAAACAGAAGGCAAAGTTATTCAG
CGGGGTATCCACCGTAACAAGCAACCAAAATGAAGCAACCGAAAAAGGTAAAATTCCTTCCATGTGGAGTTTATACCGTG
AAAGATTTCCGCATAAGGAACGCCAGGACATGAAGAGAGATACGATTGCGCTTTATTCAGATTATGAGTCGGAAGAATAT
GGGGCGTATACATTTTCAATCGGTACGTTCGCTGATCAGCATGAAAAAGCGGCCAATGTGATTTCGCTCCCTGCATCCGA
ATATGCCGTTTTTGTTTCAAGGCGGGGGAGGATCGAAGAGGTCGTGTTTGAGACTTGGCAGGAGATTTGGACATGGGCTG
AGAAAAATCTCCGTACATATACCGGAGATTATGAAGTTTATGGTGAACAAGCAGTGAATCCCGAAAATGCTCAAGTTGCC
ATTTATATTGCTGTCGATCGAAAAAAATAA

Upstream 100 bases:

>100_bases
AAGATATGATCGAAATCTGTGTGCCTTATATAAAAGAAGAGGGAAAAACCGAGGCCGAAGCGAGAGCGCTTTTGTCGCGG
ACACTCCCTTATTTAAAACG

Downstream 100 bases:

>100_bases
AGCTTGTAAAACTAATGCTGTTAGTTTTAAAATGGAAACTAACGGTATTAGTTTTTTATTTTGATGGAAGAGGTGGAAGT
TATGAGGATGACCCGATTTG

Product: YobU

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 169; Mature: 168

Protein sequence:

>169_residues
MGGGANGRRAGKMSFSHFEKQKAKLFSGVSTVTSNQNEATEKGKIPSMWSLYRERFPHKERQDMKRDTIALYSDYESEEY
GAYTFSIGTFADQHEKAANVISLPASEYAVFVSRRGRIEEVVFETWQEIWTWAEKNLRTYTGDYEVYGEQAVNPENAQVA
IYIAVDRKK

Sequences:

>Translated_169_residues
MGGGANGRRAGKMSFSHFEKQKAKLFSGVSTVTSNQNEATEKGKIPSMWSLYRERFPHKERQDMKRDTIALYSDYESEEY
GAYTFSIGTFADQHEKAANVISLPASEYAVFVSRRGRIEEVVFETWQEIWTWAEKNLRTYTGDYEVYGEQAVNPENAQVA
IYIAVDRKK
>Mature_168_residues
GGGANGRRAGKMSFSHFEKQKAKLFSGVSTVTSNQNEATEKGKIPSMWSLYRERFPHKERQDMKRDTIALYSDYESEEYG
AYTFSIGTFADQHEKAANVISLPASEYAVFVSRRGRIEEVVFETWQEIWTWAEKNLRTYTGDYEVYGEQAVNPENAQVAI
YIAVDRKK

Specific function: Unknown

COG id: COG3708

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010499
- InterPro:   IPR011256 [H]

Pfam domain/function: PF06445 AraC_E_bind [H]

EC number: NA

Molecular weight: Translated: 19390; Mature: 19259

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGGGANGRRAGKMSFSHFEKQKAKLFSGVSTVTSNQNEATEKGKIPSMWSLYRERFPHKE
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCHHHHHHHHHCCCHH
RQDMKRDTIALYSDYESEEYGAYTFSIGTFADQHEKAANVISLPASEYAVFVSRRGRIEE
HHHHHHHHEEEEECCCCCCCCEEEEEECCCHHHHHHHHCEEECCCHHHEEEECCCCCHHH
VVFETWQEIWTWAEKNLRTYTGDYEVYGEQAVNPENAQVAIYIAVDRKK
HHHHHHHHHHHHHHCCCEEECCCEEECCCCCCCCCCCEEEEEEEEECCC
>Mature Secondary Structure 
GGGANGRRAGKMSFSHFEKQKAKLFSGVSTVTSNQNEATEKGKIPSMWSLYRERFPHKE
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCHHHHHHHHHCCCHH
RQDMKRDTIALYSDYESEEYGAYTFSIGTFADQHEKAANVISLPASEYAVFVSRRGRIEE
HHHHHHHHEEEEECCCCCCCCEEEEEECCCHHHHHHHHCEEECCCHHHEEEECCCCCHHH
VVFETWQEIWTWAEKNLRTYTGDYEVYGEQAVNPENAQVAIYIAVDRKK
HHHHHHHHHHHHHHCCCEEECCCEEECCCCCCCCCCCEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]