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The map label for this gene is yngD [H]

Identifier: 52785881

GI number: 52785881

Start: 2075691

End: 2076893

Strand: Reverse

Name: yngD [H]

Synonym: BLi02130

Alternate gene names: 52785881

Gene position: 2076893-2075691 (Counterclockwise)

Preceding gene: 52785882

Following gene: 52785880

Centisome position: 49.18

GC content: 47.71

Gene sequence:

>1203_bases
ATGTATCATTTGTATACTCACAACGACTTGGACGGAGTCGGCTGCGGAATTCTCGCAAAAGTGGCTTTTGGCGAACGGGT
CGAGGTCCGCTACAATTCGGTCACCGGACTCGACATGCAAGTCGGGCGTTTTTTGGAGCGGACAAAAGGCAAAGAAAAAC
AGCATGAAGGCCTGTTTATCACGGACTTGTCCGTTCATCAAGAAAATGAGGAAAGGCTGGACCAATATGCGGAAGCGGGG
GGAAAGGTCAAACTGATCGACCACCATAAAACTGCGCTTCATTTGAATGAACGCCCTTGGGGCATGATAAAAGTTCAATA
TGAGGATGGCAGGCTCGCTTCAGCGACTTCTCTTTTCTATGAATACTTAATAGACAACGGCCACATTCGAGAGACAAAAG
CGATGGATCAGTTCGTCGAACTCGTACGCCTCTATGATACATGGGAATGGGAACAGACGGGCGCTCTCGAAGCGAAACGC
CTGAATGACCTGTTTTTTATGGTATCCATCGACGAATTTGAGGAAAAAATGATCCGGCGCCTTAAAGAAAGCGACGCGTT
TTCATTTGATGAATTCGAAGAAAAAATCTTGGATATGGAAGAAGAAAAAATTGAACGGTATATCCGCAGGAAACGGCGGG
AAATCGTTCAAACCTTCATTAATGCGCACTGCGTCGGCATCGTGCATGCCGAATCCTATCATTCAGAGGTGGGGAACGAA
CTCGGGAAAACGTATCCGCACCTAGACTATATCGCCATCTTAAATATGGGCGGCAAAAAAGTGAGCCTTCGCACCATCCA
TGATGAAACAGATGTATCAGAAATCGCCGGCACGTTCGGCGGAGGCGGCCATGCCAAGGCAGCGGGGTGCCCGCTGACAG
ATGAAGCGTTCAAGCTGTATGTAACTGAACCGTTTCCGCTGGAGCCCTTGAGAGCAGATGCCTTTAAAAACGTCTATAAT
GTAAAAAAGTCCGACTACGGCAGCCTTTATGTCAACAGGGACGAGGACCAGTTTTTTCTCTTTCCTAGCGCAAATGGCTG
GAACATTCAATTAAACGGCGTGGCTCAGCATGAGACATTCACTTCATTCGAAGAGGCAGAGCGGTTCATTAAAAGAAATT
ACGCTGCATGGCTCGCGAGGGATGAAGCATTTGTCCAATATTTGATGCAGCAGGTGAAACTGGCGATTCAAACGACAGGC
TAA

Upstream 100 bases:

>100_bases
TCACAACTGTATAAAAAATCCGTTTCTTTACAATAGTAAGATGAGAAAGATGCGCCTGCTGCGGCAGGCCGACAATAAAA
CAGCAAGGTGGGCGGGAAGC

Downstream 100 bases:

>100_bases
AGACAGCGACATGTCTTGGCCTGTTTTTTCATATACAAAAAAGAACATCCGGCATATAATAACAGAAAGTTCTGATTTTT
CCAAAAGGGGAGATGTTCAT

Product: YngD

Products: NA

Alternate protein names: NanoRNAse B [H]

Number of amino acids: Translated: 400; Mature: 400

Protein sequence:

>400_residues
MYHLYTHNDLDGVGCGILAKVAFGERVEVRYNSVTGLDMQVGRFLERTKGKEKQHEGLFITDLSVHQENEERLDQYAEAG
GKVKLIDHHKTALHLNERPWGMIKVQYEDGRLASATSLFYEYLIDNGHIRETKAMDQFVELVRLYDTWEWEQTGALEAKR
LNDLFFMVSIDEFEEKMIRRLKESDAFSFDEFEEKILDMEEEKIERYIRRKRREIVQTFINAHCVGIVHAESYHSEVGNE
LGKTYPHLDYIAILNMGGKKVSLRTIHDETDVSEIAGTFGGGGHAKAAGCPLTDEAFKLYVTEPFPLEPLRADAFKNVYN
VKKSDYGSLYVNRDEDQFFLFPSANGWNIQLNGVAQHETFTSFEEAERFIKRNYAAWLARDEAFVQYLMQQVKLAIQTTG

Sequences:

>Translated_400_residues
MYHLYTHNDLDGVGCGILAKVAFGERVEVRYNSVTGLDMQVGRFLERTKGKEKQHEGLFITDLSVHQENEERLDQYAEAG
GKVKLIDHHKTALHLNERPWGMIKVQYEDGRLASATSLFYEYLIDNGHIRETKAMDQFVELVRLYDTWEWEQTGALEAKR
LNDLFFMVSIDEFEEKMIRRLKESDAFSFDEFEEKILDMEEEKIERYIRRKRREIVQTFINAHCVGIVHAESYHSEVGNE
LGKTYPHLDYIAILNMGGKKVSLRTIHDETDVSEIAGTFGGGGHAKAAGCPLTDEAFKLYVTEPFPLEPLRADAFKNVYN
VKKSDYGSLYVNRDEDQFFLFPSANGWNIQLNGVAQHETFTSFEEAERFIKRNYAAWLARDEAFVQYLMQQVKLAIQTTG
>Mature_400_residues
MYHLYTHNDLDGVGCGILAKVAFGERVEVRYNSVTGLDMQVGRFLERTKGKEKQHEGLFITDLSVHQENEERLDQYAEAG
GKVKLIDHHKTALHLNERPWGMIKVQYEDGRLASATSLFYEYLIDNGHIRETKAMDQFVELVRLYDTWEWEQTGALEAKR
LNDLFFMVSIDEFEEKMIRRLKESDAFSFDEFEEKILDMEEEKIERYIRRKRREIVQTFINAHCVGIVHAESYHSEVGNE
LGKTYPHLDYIAILNMGGKKVSLRTIHDETDVSEIAGTFGGGGHAKAAGCPLTDEAFKLYVTEPFPLEPLRADAFKNVYN
VKKSDYGSLYVNRDEDQFFLFPSANGWNIQLNGVAQHETFTSFEEAERFIKRNYAAWLARDEAFVQYLMQQVKLAIQTTG

Specific function: Degrades RNA oligonucleotides with a length of 5 nucleotides in a 3'- to 5'-direction. Less active on shorter RNA oligonucleotides and on those with a length of 24 nucleotides. Prefers RNA oligonucleotides containing adenines rather than cytosines [H]

COG id: COG2404

COG function: function code R; Predicted phosphohydrolase (DHH superfamily)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003156 [H]

Pfam domain/function: PF02272 DHHA1 [H]

EC number: NA

Molecular weight: Translated: 46217; Mature: 46217

Theoretical pI: Translated: 5.17; Mature: 5.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYHLYTHNDLDGVGCGILAKVAFGERVEVRYNSVTGLDMQVGRFLERTKGKEKQHEGLFI
CEEEEECCCCCCCCHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHCCCCHHCCCEEE
TDLSVHQENEERLDQYAEAGGKVKLIDHHKTALHLNERPWGMIKVQYEDGRLASATSLFY
EEECCCCCCHHHHHHHHHCCCEEEEEECCCEEEEECCCCCEEEEEEECCCCCHHHHHHHH
EYLIDNGHIRETKAMDQFVELVRLYDTWEWEQTGALEAKRLNDLFFMVSIDEFEEKMIRR
HHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCEEEEEEHHHHHHHHHHH
LKESDAFSFDEFEEKILDMEEEKIERYIRRKRREIVQTFINAHCVGIVHAESYHSEVGNE
HHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHH
LGKTYPHLDYIAILNMGGKKVSLRTIHDETDVSEIAGTFGGGGHAKAAGCPLTDEAFKLY
HHCCCCCCEEEEEEECCCCEEEEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCCEEEE
VTEPFPLEPLRADAFKNVYNVKKSDYGSLYVNRDEDQFFLFPSANGWNIQLNGVAQHETF
EECCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCEEEEEECCCCCEEEECCEECCHHH
TSFEEAERFIKRNYAAWLARDEAFVQYLMQQVKLAIQTTG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECC
>Mature Secondary Structure
MYHLYTHNDLDGVGCGILAKVAFGERVEVRYNSVTGLDMQVGRFLERTKGKEKQHEGLFI
CEEEEECCCCCCCCHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHCCCCHHCCCEEE
TDLSVHQENEERLDQYAEAGGKVKLIDHHKTALHLNERPWGMIKVQYEDGRLASATSLFY
EEECCCCCCHHHHHHHHHCCCEEEEEECCCEEEEECCCCCEEEEEEECCCCCHHHHHHHH
EYLIDNGHIRETKAMDQFVELVRLYDTWEWEQTGALEAKRLNDLFFMVSIDEFEEKMIRR
HHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCEEEEEEHHHHHHHHHHH
LKESDAFSFDEFEEKILDMEEEKIERYIRRKRREIVQTFINAHCVGIVHAESYHSEVGNE
HHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHH
LGKTYPHLDYIAILNMGGKKVSLRTIHDETDVSEIAGTFGGGGHAKAAGCPLTDEAFKLY
HHCCCCCCEEEEEEECCCCEEEEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCCEEEE
VTEPFPLEPLRADAFKNVYNVKKSDYGSLYVNRDEDQFFLFPSANGWNIQLNGVAQHETF
EECCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCEEEEEECCCCCEEEECCEECCHHH
TSFEEAERFIKRNYAAWLARDEAFVQYLMQQVKLAIQTTG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]