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The map label for this gene is araR [H]

Identifier: 52785815

GI number: 52785815

Start: 1999578

End: 2000744

Strand: Reverse

Name: araR [H]

Synonym: BLi02061

Alternate gene names: 52785815

Gene position: 2000744-1999578 (Counterclockwise)

Preceding gene: 52785820

Following gene: 52785811

Centisome position: 47.38

GC content: 36.85

Gene sequence:

>1167_bases
ATGATAAAATATGTCCACACAAATCATTCAATTAAAAAAATTAGAATGCGAACAACTGCGAAAGAAGTGAGTGAAATGAA
ACCAAAGTATAAGGTCATCATTAATGACATAAAAAGTAAAATACTTTCAGGAGTTTACAGAGCGGGAGACCAAATTCCTA
CTGAATCCGCCATACAGGAAGAGTACAAAGTCAGCCGCCACACTGTTCGAAAAGCCATTTTAGAACTATCGAACGAAGGG
TTCTTAAGAAGTGAAAAAGGGTCTGGCACTTATGTTAGTAACCAGTATCAATCAAAAGCCGGCGGGAATTCCAATAACAA
AATAATCGGTGTAATCACGACCTACATTTCTGATTACATTTTCCCCTCCATTATTCGTGGAATTGAAGGGAGATTGAATG
AGGCTAATTATTCGTTACTATTAGCTAGTACAAATAATGATGTCGAACAAGAAAAAAAAGCTTTGGAAATGATGCTGTCA
TTTGGCGTAGATGGTTTAATTGTTGAACCTACGAAAAGCAATCTGTACAATCCCAATATTGCCTACTACCTATCGTTTAA
GGAACAGGATATTCCTTTCATCATGATCAATGCTTATTATGAAGAATTAGATGTTCCTTTTCTTTGTCTCGATGACGTGC
AGTCAAGCTATCTCGCAACAAAAGAATTAATATCAAAAGGACATACACAAATTGGTCTCATTTCAAAAATGGATGATTTA
CAAGGAAAGTATCGAATGAAGGGGTATATAAAAGCGCTTGGTGAAGCCAAATTACGATTTTACCCGGAGCATGTGCTTTC
GTACAATATAGAGACGAAGCTGGACCTATACACAGACCTGAAGAAGTTTCTAAATGAAAAAAGAGACGTGTTGACTGCAA
TCGTCTGCTACAACGACGAAGTAGGGCTGGAAGTAGCAAATGTATGCAGACAACTTAATATTTCTATCCCGGACAAATTG
TCAATTATTGGTCAGGACAATTCGTATATCGCCAAAAATGCGAATATCAAACTAACAACATTGACCCATCCTCAAGAACA
AATGGGACACGATGCAGCTGATTGGGTCATTAAAAAATTACAAGGAAAGAAGGATTTACCAAACGAAACCTACTATCAAC
CTGTGTTAGTTGAAGGCGAAACCGTAAAAGAGTTAGAAATACAATAA

Upstream 100 bases:

>100_bases
ATAAAAGGTATTTGAATAACATAAAACCTAAAGAAAATTTTTATAATTGCTAGTTAATTTTCACGAAAATAAGGCGGAAT
CTTTTAATTCATTGTAAGCC

Downstream 100 bases:

>100_bases
TCATAGCGTGATCAAGAAAAACCCAGTCCATGTTCACTAAAGGCGCGAACACGGACTGGGTTGTTTTACTCTGGTATCAA
TTAAGCAAAGAAATGTTGAA

Product: AraR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 388; Mature: 388

Protein sequence:

>388_residues
MIKYVHTNHSIKKIRMRTTAKEVSEMKPKYKVIINDIKSKILSGVYRAGDQIPTESAIQEEYKVSRHTVRKAILELSNEG
FLRSEKGSGTYVSNQYQSKAGGNSNNKIIGVITTYISDYIFPSIIRGIEGRLNEANYSLLLASTNNDVEQEKKALEMMLS
FGVDGLIVEPTKSNLYNPNIAYYLSFKEQDIPFIMINAYYEELDVPFLCLDDVQSSYLATKELISKGHTQIGLISKMDDL
QGKYRMKGYIKALGEAKLRFYPEHVLSYNIETKLDLYTDLKKFLNEKRDVLTAIVCYNDEVGLEVANVCRQLNISIPDKL
SIIGQDNSYIAKNANIKLTTLTHPQEQMGHDAADWVIKKLQGKKDLPNETYYQPVLVEGETVKELEIQ

Sequences:

>Translated_388_residues
MIKYVHTNHSIKKIRMRTTAKEVSEMKPKYKVIINDIKSKILSGVYRAGDQIPTESAIQEEYKVSRHTVRKAILELSNEG
FLRSEKGSGTYVSNQYQSKAGGNSNNKIIGVITTYISDYIFPSIIRGIEGRLNEANYSLLLASTNNDVEQEKKALEMMLS
FGVDGLIVEPTKSNLYNPNIAYYLSFKEQDIPFIMINAYYEELDVPFLCLDDVQSSYLATKELISKGHTQIGLISKMDDL
QGKYRMKGYIKALGEAKLRFYPEHVLSYNIETKLDLYTDLKKFLNEKRDVLTAIVCYNDEVGLEVANVCRQLNISIPDKL
SIIGQDNSYIAKNANIKLTTLTHPQEQMGHDAADWVIKKLQGKKDLPNETYYQPVLVEGETVKELEIQ
>Mature_388_residues
MIKYVHTNHSIKKIRMRTTAKEVSEMKPKYKVIINDIKSKILSGVYRAGDQIPTESAIQEEYKVSRHTVRKAILELSNEG
FLRSEKGSGTYVSNQYQSKAGGNSNNKIIGVITTYISDYIFPSIIRGIEGRLNEANYSLLLASTNNDVEQEKKALEMMLS
FGVDGLIVEPTKSNLYNPNIAYYLSFKEQDIPFIMINAYYEELDVPFLCLDDVQSSYLATKELISKGHTQIGLISKMDDL
QGKYRMKGYIKALGEAKLRFYPEHVLSYNIETKLDLYTDLKKFLNEKRDVLTAIVCYNDEVGLEVANVCRQLNISIPDKL
SIIGQDNSYIAKNANIKLTTLTHPQEQMGHDAADWVIKKLQGKKDLPNETYYQPVLVEGETVKELEIQ

Specific function: Transcriptional repressor of the arabinose utilization genes [H]

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790369, Length=313, Percent_Identity=25.2396166134185, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI1787948, Length=283, Percent_Identity=24.7349823321555, Blast_Score=104, Evalue=9e-24,
Organism=Escherichia coli, GI48994940, Length=268, Percent_Identity=24.2537313432836, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1788474, Length=276, Percent_Identity=24.6376811594203, Blast_Score=88, Evalue=9e-19,
Organism=Escherichia coli, GI1790194, Length=271, Percent_Identity=23.9852398523985, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1789202, Length=248, Percent_Identity=23.3870967741935, Blast_Score=85, Evalue=8e-18,
Organism=Escherichia coli, GI1790715, Length=265, Percent_Identity=24.9056603773585, Blast_Score=82, Evalue=8e-17,
Organism=Escherichia coli, GI1786950, Length=69, Percent_Identity=46.3768115942029, Blast_Score=66, Evalue=5e-12,
Organism=Escherichia coli, GI87082208, Length=85, Percent_Identity=40, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1789068, Length=246, Percent_Identity=23.1707317073171, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR001761
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 44127; Mature: 44127

Theoretical pI: Translated: 7.19; Mature: 7.19

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKYVHTNHSIKKIRMRTTAKEVSEMKPKYKVIINDIKSKILSGVYRAGDQIPTESAIQE
CEEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
EYKVSRHTVRKAILELSNEGFLRSEKGSGTYVSNQYQSKAGGNSNNKIIGVITTYISDYI
HHHHHHHHHHHHHHHHCCCCCEECCCCCCCEECCCHHHCCCCCCCCEEEEEHHHHHHHHH
FPSIIRGIEGRLNEANYSLLLASTNNDVEQEKKALEMMLSFGVDGLIVEPTKSNLYNPNI
HHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCE
AYYLSFKEQDIPFIMINAYYEELDVPFLCLDDVQSSYLATKELISKGHTQIGLISKMDDL
EEEEEEECCCCCEEEEEEEHHHCCCCEEEHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHH
QGKYRMKGYIKALGEAKLRFYPEHVLSYNIETKLDLYTDLKKFLNEKRDVLTAIVCYNDE
CCHHHHHHHHHHHCCHHHEECCHHHHEECCCCHHHHHHHHHHHHHHHHHHEEEEEEECCC
VGLEVANVCRQLNISIPDKLSIIGQDNSYIAKNANIKLTTLTHPQEQMGHDAADWVIKKL
CCHHHHHHHHHCCCCCCCCEEEEECCCCEEEECCCEEEEEECCCHHHHCCCHHHHHHHHH
QGKKDLPNETYYQPVLVEGETVKELEIQ
CCCCCCCCCCCCCCEEECCCCCCCEECC
>Mature Secondary Structure
MIKYVHTNHSIKKIRMRTTAKEVSEMKPKYKVIINDIKSKILSGVYRAGDQIPTESAIQE
CEEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
EYKVSRHTVRKAILELSNEGFLRSEKGSGTYVSNQYQSKAGGNSNNKIIGVITTYISDYI
HHHHHHHHHHHHHHHHCCCCCEECCCCCCCEECCCHHHCCCCCCCCEEEEEHHHHHHHHH
FPSIIRGIEGRLNEANYSLLLASTNNDVEQEKKALEMMLSFGVDGLIVEPTKSNLYNPNI
HHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCE
AYYLSFKEQDIPFIMINAYYEELDVPFLCLDDVQSSYLATKELISKGHTQIGLISKMDDL
EEEEEEECCCCCEEEEEEEHHHCCCCEEEHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHH
QGKYRMKGYIKALGEAKLRFYPEHVLSYNIETKLDLYTDLKKFLNEKRDVLTAIVCYNDE
CCHHHHHHHHHHHCCHHHEECCHHHHEECCCCHHHHHHHHHHHHHHHHHHEEEEEEECCC
VGLEVANVCRQLNISIPDKLSIIGQDNSYIAKNANIKLTTLTHPQEQMGHDAADWVIKKL
CCHHHHHHHHHCCCCCCCCEEEEECCCCEEEECCCEEEEEECCCHHHHCCCHHHHHHHHH
QGKKDLPNETYYQPVLVEGETVKELEIQ
CCCCCCCCCCCCCCEEECCCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]