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The map label for this gene is ydhD [H]

Identifier: 52785710

GI number: 52785710

Start: 1912402

End: 1913670

Strand: Reverse

Name: ydhD [H]

Synonym: BLi01952

Alternate gene names: 52785710

Gene position: 1913670-1912402 (Counterclockwise)

Preceding gene: 52785714

Following gene: 52785709

Centisome position: 45.32

GC content: 49.25

Gene sequence:

>1269_bases
GTGTGCCAGTTGTTTATTTATACAGTCCAGCCGGGAGATTCACTATTTGTCATCGGCGCCAAGTTCGGAATTTCGATTGA
CCAGATCCGATTGGCGAATGGGTTGATCGCAACAAACATTGTCCCCGGACAGGCTCTTTTAATACCGCTTTATACATATA
CCGTTCAGCCGGGAGACAGTTATTACACGATTGCCCGCCGGACGTTTGTATCCGTCGAAGCATTGCAAAAAGCAAATCCG
TCTGTAACCCCTTCCAATATGAGGCCGGGGATAAAAGTGATGATTCCGGAATTGCCGAAAAAACCGATCACTGCTTTAGG
ATATTACACACTGAGAAACCCCCGGTTAGACCAGGAATTGATTCATAATTTTGCCCCATACGCCACGTATCTGGCATTTT
TTGAATACCACATTTCAAGCGACGGATCGTTAAGCGAGCTGAATGATTCACCGGCCGTACAAACGGCTTGGAGACGGCGC
GTTCCTCCCCTCATGACAGTCACCAATCTAACTGAATCAGGCTTCAGTCCGTCTCTTGCGCACCGCGTATTAAATCAGCC
TGCCGTAAGAAATCGCCTCATCGACAATATTGTCCAAACGATTTCCAGAAAAGGATATGCAGGCGTCAATATTGATTTCG
AACAGATTTTGGAGGAAGACAGAGATTTATTTTCAGGTTTTCTCCGCCTGTTGAAAGAGCGGCTGAAGCCGTCCGGCTAT
GTGTTGACGATTGCCGTTCCGCCGAAAACAAATGAAAATATCGCCTGGCTGAAAGGGTATGACTATGGCGGAATCGGTGC
AGTGAGCGACCTTATCTTCATCATGGCATACGACTGGCACCACGGGACAAGCGAGCCCGGCCCCATTGCTCCGATCAATG
AAGTCCGGCAAACAATTCAATTTGCTCTCCGCCATGTCCCCAAAGAAAAAATCGTTCTCGGCTTTCCGCTTTACGGCTAT
AACTGGACCCTGCCCTATCAGCCCGGTGCCGTATACCCCGGAATCGCCAACCAAGACGCCGTTCAGCTCGCCATGAAGCA
CCAGGCACCGATTCAATATGATACAAATTCTGAGTCCCCTTTTTTCAGATACACCGATGAACAGGGCAGACGGCATGTCG
TATGGTTTGAAGACGCACGCAGCATCGGAAAAAAACTGCAGCTGATCACCGAATACGGACTTGACGGCGGCGGCGTCTGG
CAGCTCACACTCAGTTTTCCGCAAGGAACATGGCTCTTGACCAAATTCTTTCGCGTCCGAAAAGTCTGA

Upstream 100 bases:

>100_bases
CTATTCACCATTCCAGCTGTAAAAAACGGCGCATGATCCTTCTGCAACGGTCATAGACATAGCATAAAACCCCCTGTCAC
ATACAGAGGAACAAAAGGAA

Downstream 100 bases:

>100_bases
CATCATTATGTGATTTATTGTAAAATAACAAACCGAATAATCCCGCTAACGAATTTTGATACTAAAGATGTGTCCTTCAC
ACAATAACAAATTTGAAAGG

Product: hypothetical protein

Products: 1,6-Anhydrobond In The Muramic Acid Residue [C]

Alternate protein names: NA

Number of amino acids: Translated: 422; Mature: 422

Protein sequence:

>422_residues
MCQLFIYTVQPGDSLFVIGAKFGISIDQIRLANGLIATNIVPGQALLIPLYTYTVQPGDSYYTIARRTFVSVEALQKANP
SVTPSNMRPGIKVMIPELPKKPITALGYYTLRNPRLDQELIHNFAPYATYLAFFEYHISSDGSLSELNDSPAVQTAWRRR
VPPLMTVTNLTESGFSPSLAHRVLNQPAVRNRLIDNIVQTISRKGYAGVNIDFEQILEEDRDLFSGFLRLLKERLKPSGY
VLTIAVPPKTNENIAWLKGYDYGGIGAVSDLIFIMAYDWHHGTSEPGPIAPINEVRQTIQFALRHVPKEKIVLGFPLYGY
NWTLPYQPGAVYPGIANQDAVQLAMKHQAPIQYDTNSESPFFRYTDEQGRRHVVWFEDARSIGKKLQLITEYGLDGGGVW
QLTLSFPQGTWLLTKFFRVRKV

Sequences:

>Translated_422_residues
MCQLFIYTVQPGDSLFVIGAKFGISIDQIRLANGLIATNIVPGQALLIPLYTYTVQPGDSYYTIARRTFVSVEALQKANP
SVTPSNMRPGIKVMIPELPKKPITALGYYTLRNPRLDQELIHNFAPYATYLAFFEYHISSDGSLSELNDSPAVQTAWRRR
VPPLMTVTNLTESGFSPSLAHRVLNQPAVRNRLIDNIVQTISRKGYAGVNIDFEQILEEDRDLFSGFLRLLKERLKPSGY
VLTIAVPPKTNENIAWLKGYDYGGIGAVSDLIFIMAYDWHHGTSEPGPIAPINEVRQTIQFALRHVPKEKIVLGFPLYGY
NWTLPYQPGAVYPGIANQDAVQLAMKHQAPIQYDTNSESPFFRYTDEQGRRHVVWFEDARSIGKKLQLITEYGLDGGGVW
QLTLSFPQGTWLLTKFFRVRKV
>Mature_422_residues
MCQLFIYTVQPGDSLFVIGAKFGISIDQIRLANGLIATNIVPGQALLIPLYTYTVQPGDSYYTIARRTFVSVEALQKANP
SVTPSNMRPGIKVMIPELPKKPITALGYYTLRNPRLDQELIHNFAPYATYLAFFEYHISSDGSLSELNDSPAVQTAWRRR
VPPLMTVTNLTESGFSPSLAHRVLNQPAVRNRLIDNIVQTISRKGYAGVNIDFEQILEEDRDLFSGFLRLLKERLKPSGY
VLTIAVPPKTNENIAWLKGYDYGGIGAVSDLIFIMAYDWHHGTSEPGPIAPINEVRQTIQFALRHVPKEKIVLGFPLYGY
NWTLPYQPGAVYPGIANQDAVQLAMKHQAPIQYDTNSESPFFRYTDEQGRRHVVWFEDARSIGKKLQLITEYGLDGGGVW
QLTLSFPQGTWLLTKFFRVRKV

Specific function: Murein-Degrading Enzyme. May Play A Role In Recycling Of Muropeptides During Cell Elongation And/Or Cell Division (By Similarity). [C]

COG id: COG3858

COG function: function code R; Predicted glycosyl hydrolase

Gene ontology:

Cell location: Spore wall (Probable). Note=Probably localized either on the surface of the outer spore membrane and/or in the inner spore coat [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 LysM repeats [H]

Homologues:

Organism=Homo sapiens, GI218083233, Length=225, Percent_Identity=24, Blast_Score=67, Evalue=4e-11,
Organism=Homo sapiens, GI218083215, Length=225, Percent_Identity=24, Blast_Score=66, Evalue=5e-11,
Organism=Homo sapiens, GI218083182, Length=225, Percent_Identity=24, Blast_Score=66, Evalue=5e-11,
Organism=Homo sapiens, GI218083142, Length=225, Percent_Identity=24, Blast_Score=66, Evalue=5e-11,
Organism=Drosophila melanogaster, GI45550474, Length=271, Percent_Identity=26.5682656826568, Blast_Score=80, Evalue=3e-15,
Organism=Drosophila melanogaster, GI116007452, Length=286, Percent_Identity=25.8741258741259, Blast_Score=72, Evalue=8e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011583
- InterPro:   IPR001223
- InterPro:   IPR017853
- InterPro:   IPR013781
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF00704 Glyco_hydro_18; PF01476 LysM [H]

EC number: 3.2.1.- [C]

Molecular weight: Translated: 47589; Mature: 47589

Theoretical pI: Translated: 9.27; Mature: 9.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCQLFIYTVQPGDSLFVIGAKFGISIDQIRLANGLIATNIVPGQALLIPLYTYTVQPGDS
CEEEEEEEECCCCEEEEEEEECCCCHHHEECCCCEEEEECCCCCEEEEEEEEEEECCCCC
YYTIARRTFVSVEALQKANPSVTPSNMRPGIKVMIPELPKKPITALGYYTLRNPRLDQEL
EEEEHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCHHEEEEEECCCCCCHHH
IHNFAPYATYLAFFEYHISSDGSLSELNDSPAVQTAWRRRVPPLMTVTNLTESGFSPSLA
HHHHCHHHHHHHHHHHCCCCCCCHHHCCCCCHHHHHHHHCCCCEEEEECCCCCCCCHHHH
HRVLNQPAVRNRLIDNIVQTISRKGYAGVNIDFEQILEEDRDLFSGFLRLLKERLKPSGY
HHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCE
VLTIAVPPKTNENIAWLKGYDYGGIGAVSDLIFIMAYDWHHGTSEPGPIAPINEVRQTIQ
EEEEEECCCCCCCEEEEECCCCCCHHHHHHEEEEEEEECCCCCCCCCCCCCHHHHHHHHH
FALRHVPKEKIVLGFPLYGYNWTLPYQPGAVYPGIANQDAVQLAMKHQAPIQYDTNSESP
HHHHHCCCCCEEEEEEECCCEEECCCCCCCCCCCCCCCHHHHHHHHCCCCEEECCCCCCC
FFRYTDEQGRRHVVWFEDARSIGKKLQLITEYGLDGGGVWQLTLSFPQGTWLLTKFFRVR
EEEECCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHH
KV
CC
>Mature Secondary Structure
MCQLFIYTVQPGDSLFVIGAKFGISIDQIRLANGLIATNIVPGQALLIPLYTYTVQPGDS
CEEEEEEEECCCCEEEEEEEECCCCHHHEECCCCEEEEECCCCCEEEEEEEEEEECCCCC
YYTIARRTFVSVEALQKANPSVTPSNMRPGIKVMIPELPKKPITALGYYTLRNPRLDQEL
EEEEHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCHHEEEEEECCCCCCHHH
IHNFAPYATYLAFFEYHISSDGSLSELNDSPAVQTAWRRRVPPLMTVTNLTESGFSPSLA
HHHHCHHHHHHHHHHHCCCCCCCHHHCCCCCHHHHHHHHCCCCEEEEECCCCCCCCHHHH
HRVLNQPAVRNRLIDNIVQTISRKGYAGVNIDFEQILEEDRDLFSGFLRLLKERLKPSGY
HHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCE
VLTIAVPPKTNENIAWLKGYDYGGIGAVSDLIFIMAYDWHHGTSEPGPIAPINEVRQTIQ
EEEEEECCCCCCCEEEEECCCCCCHHHHHHEEEEEEEECCCCCCCCCCCCCHHHHHHHHH
FALRHVPKEKIVLGFPLYGYNWTLPYQPGAVYPGIANQDAVQLAMKHQAPIQYDTNSESP
HHHHHCCCCCEEEEEEECCCEEECCCCCCCCCCCCCCCHHHHHHHHCCCCEEECCCCCCC
FFRYTDEQGRRHVVWFEDARSIGKKLQLITEYGLDGGGVWQLTLSFPQGTWLLTKFFRVR
EEEECCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHH
KV
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Muramic Acid Residue (N-Acetylmuramic Acid And N-Acetylglucosamine Residues) [C]

Specific reaction: Cleavage Of The Beta-1,4-Glycosidic Bond Between N-Acetylmuramic Acid And N-Acetylglucosamine Residues, Thereby Conserving The Energy In A Newly Synthesized 1,6-Anhydrobond In The Muramic Acid Residue. [C]

General reaction: Cleavage Of The Beta-1,4-Glycosidic Bond [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377; 12177332 [H]