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The map label for this gene is ykqC [H]

Identifier: 52785428

GI number: 52785428

Start: 1627433

End: 1629100

Strand: Reverse

Name: ykqC [H]

Synonym: BLi01668

Alternate gene names: 52785428

Gene position: 1629100-1627433 (Counterclockwise)

Preceding gene: 52785429

Following gene: 52785423

Centisome position: 38.58

GC content: 48.38

Gene sequence:

>1668_bases
ATGAAATTTGTTAAAAATGACCAAACGGCTGTATTTGCCCTTGGAGGACTTGGGGAAATCGGCAAAAACACGTACGGGGT
CCAGTTCCAGGACGAGATCGTGCTCATCGATGCGGGGATTAAGTTTCCGGAAGACGAGCTTCTCGGAATCGACTATGTCA
TCCCTGACTACACTTATTTAGTCAAAAACGAAGAAAAAATCAAAGGTCTTTTTATTACGCACGGACACGAAGACCACATC
GGCGGAATTCCGTACCTGCTCAAACAGGTGAACATTCCGGTTTACGGCGGACAGCTCGCCATCGGCCTTCTCAGGAAGAA
GCTTGAAGAGCACGGTTTGCTTCGCCAAACAAAGCTTCATATCATTGAAGAAGACGATATCGTCAAATTCAGAAAAACGT
CGGTTTCTTTTTTCAGGACGACCCACAGCATTCCGGACTCATACGGGATTGTCGTAAAAACACCGCAAGGAAACATCGTA
CATACCGGTGACTTTAAATTCGATTTTACACCGGTGGGCGAACCCGCCAACTTGACAAAGATGGCCGAAATCGGAAAAGA
AGGCGTGCTTTGCCTGCTGTCAGACAGCACAAACAGTGAAATCCCTGATTTCACGATGTCAGAGCGCAAAGTCGGAGAAA
GCATTGATGATATTTTCCGAAAAGTCGAAGGCCGGATCATCTTCGCAACCTTTGCGTCAAACATCCACCGCCTGCAGCAG
GTGATCGAAGCGGCTGTTGCAAACGGACGGAAGGTTGCCGTATTTGGGCGAAGCATGGAGTCGGCGATCGAAATCGGCCA
AACGCTCGGATATATTAAGTGTCCGAAAAACACTTTCGTTGAAGCGAATGAAATCAACAGGCTCCCTGCCGGGAAAGTGA
CGATTCTCTGTACCGGAAGCCAAGGCGAACCGATGGCTGCTCTATCTCGAATTGCAAACGGCACACACCGGCAAATCTCC
ATCAATCCCGGGGATACGGTCGTATTTTCATCATCTCCGATCCCGGGCAATACGATCAGCGTCAGCCGCACGATTAACCA
GCTTTACCGGGCGGGTGCCGATGTCATCCACGGAGCTGTGACTAACATTCACACCTCGGGACACGGCGGACAGGAAGAGC
AAAAACTGATGCTCCGCCTCATCAAGCCAAAGTTTTTCATGCCGATTCACGGTGAATACAGAATGCAGAAAATGCATGTC
AAACTGGCGACAGACTGCGGAATTCCTGAGGAAAACTGCTTTATTATGGACAACGGGGAAGTGCTTGCTTTGACAAGCGA
AGAAGCCTCAGTTGCGGGTAAAATCCCGTCAGGCAATGTTTATATTGACGGAAGCGGCATCGGCGACATCGGCAATATCG
TGCTTCGCGACCGCCGGATTCTTTCCGAAGAAGGGCTCGTCATTGTCGTTGTCAGCATCAACATGAAAGAATTCAAAGTG
TCCGCAGGGCCTGACTTAATTTCCAGAGGATTTGTCTATATGAGAGAATCCGGTGATTTAATCAATGATGCCCAGGAACT
GATTGCAGGACACCTTAAAAAAGTGATGGAGCGCAAAACGACACAGTGGTCTGAAATTAAGAACGAGATTACAGACACGC
TTGCTCCTTTCCTCTATGAAAAAACAAAACGCCGGCCGATGATCCTTCCGATTATTATGGAAGTCTAA

Upstream 100 bases:

>100_bases
CCATACAACTACAATATTGAGTTTATACAGCAAGTTGAAGGCGCTTTTTTAGAATATGAAAAGCAAAGCGAAAATTTTAA
AGTATTGGAGTTATGAATGA

Downstream 100 bases:

>100_bases
TCGCGGATGCGGATACAGCAAAAAACGGATGCACCGGGGTGCATCCGTTTTTTTATGGTTGAACCGGGATATGCCTGAAC
GCTTTAACATCAAACAATCC

Product: YkqC

Products: NA

Alternate protein names: RNase J1 [H]

Number of amino acids: Translated: 555; Mature: 555

Protein sequence:

>555_residues
MKFVKNDQTAVFALGGLGEIGKNTYGVQFQDEIVLIDAGIKFPEDELLGIDYVIPDYTYLVKNEEKIKGLFITHGHEDHI
GGIPYLLKQVNIPVYGGQLAIGLLRKKLEEHGLLRQTKLHIIEEDDIVKFRKTSVSFFRTTHSIPDSYGIVVKTPQGNIV
HTGDFKFDFTPVGEPANLTKMAEIGKEGVLCLLSDSTNSEIPDFTMSERKVGESIDDIFRKVEGRIIFATFASNIHRLQQ
VIEAAVANGRKVAVFGRSMESAIEIGQTLGYIKCPKNTFVEANEINRLPAGKVTILCTGSQGEPMAALSRIANGTHRQIS
INPGDTVVFSSSPIPGNTISVSRTINQLYRAGADVIHGAVTNIHTSGHGGQEEQKLMLRLIKPKFFMPIHGEYRMQKMHV
KLATDCGIPEENCFIMDNGEVLALTSEEASVAGKIPSGNVYIDGSGIGDIGNIVLRDRRILSEEGLVIVVVSINMKEFKV
SAGPDLISRGFVYMRESGDLINDAQELIAGHLKKVMERKTTQWSEIKNEITDTLAPFLYEKTKRRPMILPIIMEV

Sequences:

>Translated_555_residues
MKFVKNDQTAVFALGGLGEIGKNTYGVQFQDEIVLIDAGIKFPEDELLGIDYVIPDYTYLVKNEEKIKGLFITHGHEDHI
GGIPYLLKQVNIPVYGGQLAIGLLRKKLEEHGLLRQTKLHIIEEDDIVKFRKTSVSFFRTTHSIPDSYGIVVKTPQGNIV
HTGDFKFDFTPVGEPANLTKMAEIGKEGVLCLLSDSTNSEIPDFTMSERKVGESIDDIFRKVEGRIIFATFASNIHRLQQ
VIEAAVANGRKVAVFGRSMESAIEIGQTLGYIKCPKNTFVEANEINRLPAGKVTILCTGSQGEPMAALSRIANGTHRQIS
INPGDTVVFSSSPIPGNTISVSRTINQLYRAGADVIHGAVTNIHTSGHGGQEEQKLMLRLIKPKFFMPIHGEYRMQKMHV
KLATDCGIPEENCFIMDNGEVLALTSEEASVAGKIPSGNVYIDGSGIGDIGNIVLRDRRILSEEGLVIVVVSINMKEFKV
SAGPDLISRGFVYMRESGDLINDAQELIAGHLKKVMERKTTQWSEIKNEITDTLAPFLYEKTKRRPMILPIIMEV
>Mature_555_residues
MKFVKNDQTAVFALGGLGEIGKNTYGVQFQDEIVLIDAGIKFPEDELLGIDYVIPDYTYLVKNEEKIKGLFITHGHEDHI
GGIPYLLKQVNIPVYGGQLAIGLLRKKLEEHGLLRQTKLHIIEEDDIVKFRKTSVSFFRTTHSIPDSYGIVVKTPQGNIV
HTGDFKFDFTPVGEPANLTKMAEIGKEGVLCLLSDSTNSEIPDFTMSERKVGESIDDIFRKVEGRIIFATFASNIHRLQQ
VIEAAVANGRKVAVFGRSMESAIEIGQTLGYIKCPKNTFVEANEINRLPAGKVTILCTGSQGEPMAALSRIANGTHRQIS
INPGDTVVFSSSPIPGNTISVSRTINQLYRAGADVIHGAVTNIHTSGHGGQEEQKLMLRLIKPKFFMPIHGEYRMQKMHV
KLATDCGIPEENCFIMDNGEVLALTSEEASVAGKIPSGNVYIDGSGIGDIGNIVLRDRRILSEEGLVIVVVSINMKEFKV
SAGPDLISRGFVYMRESGDLINDAQELIAGHLKKVMERKTTQWSEIKNEITDTLAPFLYEKTKRRPMILPIIMEV

Specific function: Cleaves the 5'-leader sequence of certain mRNAs. May play a role in maturation and stability of specific mRNAs. Is also required for the maturation of the 16S rRNA. Acts preferentially on 16S rRNA precursors after association of the 30S and 50S ribosomal

COG id: COG0595

COG function: function code R; Predicted hydrolase of the metallo-beta-lactamase superfamily

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the metallo-beta-lactamase superfamily. RNA-metabolizing metallo-beta-lactamase-like family. RNase J subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279
- InterPro:   IPR011108
- InterPro:   IPR004613
- InterPro:   IPR001587 [H]

Pfam domain/function: PF00753 Lactamase_B; PF07521 RMMBL [H]

EC number: NA

Molecular weight: Translated: 61312; Mature: 61312

Theoretical pI: Translated: 6.57; Mature: 6.57

Prosite motif: PS01292 UPF0036

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFVKNDQTAVFALGGLGEIGKNTYGVQFQDEIVLIDAGIKFPEDELLGIDYVIPDYTYL
CCCCCCCCEEEEEECCCCCCCCCCCCEEEECCEEEEECCCCCCCHHHEEEEEECCCEEEE
VKNEEKIKGLFITHGHEDHIGGIPYLLKQVNIPVYGGQLAIGLLRKKLEEHGLLRQTKLH
ECCCCCEEEEEEECCCCCCCCCHHHHHHHCCCCEECCHHHHHHHHHHHHHCCCEEEEEEE
IIEEDDIVKFRKTSVSFFRTTHSIPDSYGIVVKTPQGNIVHTGDFKFDFTPVGEPANLTK
EECCCCCEEHHHHHHHHHHHHCCCCCCCCEEEECCCCCEEECCCCEEEEECCCCCCCHHH
MAEIGKEGVLCLLSDSTNSEIPDFTMSERKVGESIDDIFRKVEGRIIFATFASNIHRLQQ
HHHCCCCCEEEEEECCCCCCCCCCCCHHHHHCCHHHHHHHHHCCCEEEEEHHHHHHHHHH
VIEAAVANGRKVAVFGRSMESAIEIGQTLGYIKCPKNTFVEANEINRLPAGKVTILCTGS
HHHHHHCCCCEEEEECCCHHHHHHHHHHCCEEECCCCCCEEHHHCCCCCCCCEEEEEECC
QGEPMAALSRIANGTHRQISINPGDTVVFSSSPIPGNTISVSRTINQLYRAGADVIHGAV
CCCHHHHHHHHCCCCCEEEEECCCCEEEECCCCCCCCEEEHHHHHHHHHHCCHHHHHHHH
TNIHTSGHGGQEEQKLMLRLIKPKFFMPIHGEYRMQKMHVKLATDCGIPEENCFIMDNGE
HEEEECCCCCCHHHHHHHHHHCCCEEEECCCCEEEEEEEEEEEECCCCCCCCEEEEECCC
VLALTSEEASVAGKIPSGNVYIDGSGIGDIGNIVLRDRRILSEEGLVIVVVSINMKEFKV
EEEEECCCCCEECCCCCCCEEECCCCCCCHHHHEECCCHHHCCCCEEEEEEEECCEEEEE
SAGPDLISRGFVYMRESGDLINDAQELIAGHLKKVMERKTTQWSEIKNEITDTLAPFLYE
CCCCCHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
KTKRRPMILPIIMEV
HHCCCCEEEEEEECC
>Mature Secondary Structure
MKFVKNDQTAVFALGGLGEIGKNTYGVQFQDEIVLIDAGIKFPEDELLGIDYVIPDYTYL
CCCCCCCCEEEEEECCCCCCCCCCCCEEEECCEEEEECCCCCCCHHHEEEEEECCCEEEE
VKNEEKIKGLFITHGHEDHIGGIPYLLKQVNIPVYGGQLAIGLLRKKLEEHGLLRQTKLH
ECCCCCEEEEEEECCCCCCCCCHHHHHHHCCCCEECCHHHHHHHHHHHHHCCCEEEEEEE
IIEEDDIVKFRKTSVSFFRTTHSIPDSYGIVVKTPQGNIVHTGDFKFDFTPVGEPANLTK
EECCCCCEEHHHHHHHHHHHHCCCCCCCCEEEECCCCCEEECCCCEEEEECCCCCCCHHH
MAEIGKEGVLCLLSDSTNSEIPDFTMSERKVGESIDDIFRKVEGRIIFATFASNIHRLQQ
HHHCCCCCEEEEEECCCCCCCCCCCCHHHHHCCHHHHHHHHHCCCEEEEEHHHHHHHHHH
VIEAAVANGRKVAVFGRSMESAIEIGQTLGYIKCPKNTFVEANEINRLPAGKVTILCTGS
HHHHHHCCCCEEEEECCCHHHHHHHHHHCCEEECCCCCCEEHHHCCCCCCCCEEEEEECC
QGEPMAALSRIANGTHRQISINPGDTVVFSSSPIPGNTISVSRTINQLYRAGADVIHGAV
CCCHHHHHHHHCCCCCEEEEECCCCEEEECCCCCCCCEEEHHHHHHHHHHCCHHHHHHHH
TNIHTSGHGGQEEQKLMLRLIKPKFFMPIHGEYRMQKMHVKLATDCGIPEENCFIMDNGE
HEEEECCCCCCHHHHHHHHHHCCCEEEECCCCEEEEEEEEEEEECCCCCCCCEEEEECCC
VLALTSEEASVAGKIPSGNVYIDGSGIGDIGNIVLRDRRILSEEGLVIVVVSINMKEFKV
EEEEECCCCCEECCCCCCCEEECCCCCCCHHHHEECCCHHHCCCCEEEEEEEECCEEEEE
SAGPDLISRGFVYMRESGDLINDAQELIAGHLKKVMERKTTQWSEIKNEITDTLAPFLYE
CCCCCHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
KTKRRPMILPIIMEV
HHCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969500; 9384377 [H]