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The map label for this gene is ligB [H]

Identifier: 52785303

GI number: 52785303

Start: 1509475

End: 1510284

Strand: Reverse

Name: ligB [H]

Synonym: BLi01538

Alternate gene names: 52785303

Gene position: 1510284-1509475 (Counterclockwise)

Preceding gene: 52785304

Following gene: 52785302

Centisome position: 35.77

GC content: 49.01

Gene sequence:

>810_bases
TTGTTTATTTGGCCCATGCTGCTTGAGTCCGCAAAGGAGCCGTTTAACTCGGACGACTATATCACGGAAACCAAATTCGA
CGGCATCCGTCTGATCGCGTCCAGGAATAACGGTTTAATCCGCCTCTACACACGCCACAACAACGAAGTCACCGCTAAAT
TTCCGGAACTATTAACGCTCGACATACCGGATGAAACTATTTTAGACGGCGAGCTTATCGTACCTGGATCGACAGGCGCC
GGCGATTTTGAGGCCGTCATGGAACGATTCCAGTCGCGGAAAAGTTTTTATCCGATAGTATTTTGCGTTTTTGATGTCCT
GCGGATAGAAGGCGTTTCAGTTACGTCTAAGCCGCTAAGTGAACGAAAAGAATTGCTGGCCGGTCTAAAACTCGATCATC
CTAACGTTAAAATAGTCGAGGGCGTGCGCGGCCATGCTACGGATTATTTCGAATTAGTCCGCGAAAATAAGATCGAGGGC
ATCGTTATGAAGCAGGCAAACGCTCCGTATGCGGAAAATAAGCGGTCAGATCGCTGGCTGAAGATCGTTAACTACGAATA
TACTGACGTTCTGATATCAGGACTCCGCAAGGAAGACAATGCGCTGCTTCTTTCGTACCTGGACGGCCAGTATGCCGGCA
TTATGGAGTTTATGCCGTATGATGCGCGGCGGAAGTTTCATGCGGAGCGGCTAATCGTAGAAGAAACGGAGAAATACGCC
TACATCGAGCCAATTGGGTGCCGCGTCAAGCACCGGTTCAAGACGAAAAACGGTTTGTTGCGGATTCCTTCGTTCCATGA
ATGGCGTTGA

Upstream 100 bases:

>100_bases
TGTTTAAATGCCGGAATAATTTACCGCAACCGAATCGCTTTGTCTCGGCGGACTCTTACTATATCATTATAGTAACTACG
CTGAAACGAGGTGATTCTTT

Downstream 100 bases:

>100_bases
ATGTGCCGGTCATTTATCGTATTCTAATATTCGGAGGTTGAGGACGAATGGATTACGAAACAAAAGGCTATGATACGTCA
ATTGTATACGATTATAAAGA

Product: ATP-dependent DNA ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 269

Protein sequence:

>269_residues
MFIWPMLLESAKEPFNSDDYITETKFDGIRLIASRNNGLIRLYTRHNNEVTAKFPELLTLDIPDETILDGELIVPGSTGA
GDFEAVMERFQSRKSFYPIVFCVFDVLRIEGVSVTSKPLSERKELLAGLKLDHPNVKIVEGVRGHATDYFELVRENKIEG
IVMKQANAPYAENKRSDRWLKIVNYEYTDVLISGLRKEDNALLLSYLDGQYAGIMEFMPYDARRKFHAERLIVEETEKYA
YIEPIGCRVKHRFKTKNGLLRIPSFHEWR

Sequences:

>Translated_269_residues
MFIWPMLLESAKEPFNSDDYITETKFDGIRLIASRNNGLIRLYTRHNNEVTAKFPELLTLDIPDETILDGELIVPGSTGA
GDFEAVMERFQSRKSFYPIVFCVFDVLRIEGVSVTSKPLSERKELLAGLKLDHPNVKIVEGVRGHATDYFELVRENKIEG
IVMKQANAPYAENKRSDRWLKIVNYEYTDVLISGLRKEDNALLLSYLDGQYAGIMEFMPYDARRKFHAERLIVEETEKYA
YIEPIGCRVKHRFKTKNGLLRIPSFHEWR
>Mature_269_residues
MFIWPMLLESAKEPFNSDDYITETKFDGIRLIASRNNGLIRLYTRHNNEVTAKFPELLTLDIPDETILDGELIVPGSTGA
GDFEAVMERFQSRKSFYPIVFCVFDVLRIEGVSVTSKPLSERKELLAGLKLDHPNVKIVEGVRGHATDYFELVRENKIEG
IVMKQANAPYAENKRSDRWLKIVNYEYTDVLISGLRKEDNALLLSYLDGQYAGIMEFMPYDARRKFHAERLIVEETEKYA
YIEPIGCRVKHRFKTKNGLLRIPSFHEWR

Specific function: Unknown

COG id: COG1793

COG function: function code L; ATP-dependent DNA ligase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATP-dependent DNA ligase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012310 [H]

Pfam domain/function: PF01068 DNA_ligase_A_M [H]

EC number: NA

Molecular weight: Translated: 31173; Mature: 31173

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: PS50160 DNA_LIGASE_A3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFIWPMLLESAKEPFNSDDYITETKFDGIRLIASRNNGLIRLYTRHNNEVTAKFPELLTL
CEEHHHHHHHHCCCCCCCCCEEECCCCCEEEEEECCCCEEEEEEECCCEEEEECCCEEEE
DIPDETILDGELIVPGSTGAGDFEAVMERFQSRKSFYPIVFCVFDVLRIEGVSVTSKPLS
ECCCCEEECCEEEECCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHH
ERKELLAGLKLDHPNVKIVEGVRGHATDYFELVRENKIEGIVMKQANAPYAENKRSDRWL
HHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEE
KIVNYEYTDVLISGLRKEDNALLLSYLDGQYAGIMEFMPYDARRKFHAERLIVEETEKYA
EEECCCHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHCCCHHHHHHHHHHHHHHHCCCEE
YIEPIGCRVKHRFKTKNGLLRIPSFHEWR
EECCCCCEEEEEEECCCCEEECCCCCCCC
>Mature Secondary Structure
MFIWPMLLESAKEPFNSDDYITETKFDGIRLIASRNNGLIRLYTRHNNEVTAKFPELLTL
CEEHHHHHHHHCCCCCCCCCEEECCCCCEEEEEECCCCEEEEEEECCCEEEEECCCEEEE
DIPDETILDGELIVPGSTGAGDFEAVMERFQSRKSFYPIVFCVFDVLRIEGVSVTSKPLS
ECCCCEEECCEEEECCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHH
ERKELLAGLKLDHPNVKIVEGVRGHATDYFELVRENKIEGIVMKQANAPYAENKRSDRWL
HHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEE
KIVNYEYTDVLISGLRKEDNALLLSYLDGQYAGIMEFMPYDARRKFHAERLIVEETEKYA
EEECCCHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHCCCHHHHHHHHHHHHHHHCCCEE
YIEPIGCRVKHRFKTKNGLLRIPSFHEWR
EECCCCCEEEEEEECCCCEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]