Click here to switch to the map view.

The map label for this gene is sspD [H]

Identifier: 52785266

GI number: 52785266

Start: 1474561

End: 1474758

Strand: Reverse

Name: sspD [H]

Synonym: BLi01501

Alternate gene names: 52785266

Gene position: 1474758-1474561 (Counterclockwise)

Preceding gene: 52785267

Following gene: 52785261

Centisome position: 34.92

GC content: 51.01

Gene sequence:

>198_bases
ATGGCAAGAACGAATAAGCTCCTCGTTCCCGGGGCAGAGCAGGTTTTAGACCAGTTCAAATACGAAATCGCCCAAGAGTT
CGGCGTCCAGCTCGGCTCGGACTCGGTCGCTCGCTCAAACGGATCTGTAGGCGGGGAAATGACAAAACGACTTGTACAGC
AGGCACAAGCTCAATTGAATGGGCATAATGACAAATAA

Upstream 100 bases:

>100_bases
GCCAGGCGTTTTTTTGCCCTTCAACAATTGCCAGCATAAAAAGCCTCAGTCCAAATCAAACTAAACAAGCAGTACCAATT
GAAAAAGGAGTTGAGAATGC

Downstream 100 bases:

>100_bases
ATACCCTATGGATTATTCGCCGGGCCCGCTCGGCGGATATTCTTGTTTATTCGTTTGGTCAGAAGGCTTTTTCTCCTTTT
GGTAAGGAGGTGATTTAGAG

Product: SspD

Products: NA

Alternate protein names: SASP [H]

Number of amino acids: Translated: 65; Mature: 64

Protein sequence:

>65_residues
MARTNKLLVPGAEQVLDQFKYEIAQEFGVQLGSDSVARSNGSVGGEMTKRLVQQAQAQLNGHNDK

Sequences:

>Translated_65_residues
MARTNKLLVPGAEQVLDQFKYEIAQEFGVQLGSDSVARSNGSVGGEMTKRLVQQAQAQLNGHNDK
>Mature_64_residues
ARTNKLLVPGAEQVLDQFKYEIAQEFGVQLGSDSVARSNGSVGGEMTKRLVQQAQAQLNGHNDK

Specific function: SASP are bound to spore DNA. They are double-stranded DNA-binding proteins that cause DNA to change to an a-like conformation. They protect the DNA backbone from chemical and enzymatic cleavage and are thus involved in dormant spore's high resistance to U

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the alpha/beta-type SASP family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001448
- InterPro:   IPR018126 [H]

Pfam domain/function: PF00269 SASP [H]

EC number: NA

Molecular weight: Translated: 7060; Mature: 6929

Theoretical pI: Translated: 7.54; Mature: 7.54

Prosite motif: PS00304 SASP_1 ; PS00684 SASP_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARTNKLLVPGAEQVLDQFKYEIAQEFGVQLGSDSVARSNGSVGGEMTKRLVQQAQAQLN
CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHC
GHNDK
CCCCC
>Mature Secondary Structure 
ARTNKLLVPGAEQVLDQFKYEIAQEFGVQLGSDSVARSNGSVGGEMTKRLVQQAQAQLN
CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHC
GHNDK
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 6439604 [H]