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The map label for this gene is yxaF [H]

Identifier: 52785079

GI number: 52785079

Start: 1312595

End: 1313173

Strand: Reverse

Name: yxaF [H]

Synonym: BLi01311

Alternate gene names: 52785079

Gene position: 1313173-1312595 (Counterclockwise)

Preceding gene: 52785080

Following gene: 52785078

Centisome position: 31.1

GC content: 50.26

Gene sequence:

>579_bases
ATGGCAGAAAAAATGAGCAGCCGCGACAAAATTTTGCGGACGGCTTCACGATTGTTCCGCAAACAAGGCTACCATGCCAC
AGGCTTAAGCCAAATCACAGCCGAAAGCGGAGCGCCGCGGGGATCGCTTTATTATTATTTCCCCGGCGGCAAAGAGGAAC
TGGCGCAAGAGGCGATTCAATTAACCGGAGAAAGAATCAAAGCGTATATATCGTCAGCGATCAGCGGTGAAGCTGATCCT
GTCAAGGCGTTTCAATCTTATATCCAGATGATGGCTGACGGAATCGAGGAATACATCATCGAAGAAAACGACGATATTCC
GATCGTATCCGTCGCCGCAGAAACGTGGTCGTTCAGTGAAAGGCTCCGCCAAACGTGTGAACAGGTTTATCAAGACTGGC
AGCTTGTCTATCAGGAAAAACTGCTCCAGTCAGGCTATGCGCCGGAAACGGCCGAGACGCTGAGCGTCGCGATACAAGCG
ATGATTGAGGGTGCGTATGTGCTCTCAGTGACGAAAAAAAACGGCCGGCCTCTCAGTGCAGCCGCCGAACAAATTCCTTT
TTTGCTAAAACGTTCATAA

Upstream 100 bases:

>100_bases
GACAAATCGTCCTTATTTTAAAACAGGCCTTCAAAAAAGGTCTTTTTTTTCGTTAAAATTATATAGACCGATCAGTATAA
AATCATAAGGGAATGATAGA

Downstream 100 bases:

>100_bases
AGGGTGGGAATACAAATGGAACAAGCTAGAAAAGGCTCCTTCATGATTATCGCAATCTTAATCGTCGGAAATTTTCTCGC
TCTGATTAATGAGACGGTCA

Product: YxaF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 191

Protein sequence:

>192_residues
MAEKMSSRDKILRTASRLFRKQGYHATGLSQITAESGAPRGSLYYYFPGGKEELAQEAIQLTGERIKAYISSAISGEADP
VKAFQSYIQMMADGIEEYIIEENDDIPIVSVAAETWSFSERLRQTCEQVYQDWQLVYQEKLLQSGYAPETAETLSVAIQA
MIEGAYVLSVTKKNGRPLSAAAEQIPFLLKRS

Sequences:

>Translated_192_residues
MAEKMSSRDKILRTASRLFRKQGYHATGLSQITAESGAPRGSLYYYFPGGKEELAQEAIQLTGERIKAYISSAISGEADP
VKAFQSYIQMMADGIEEYIIEENDDIPIVSVAAETWSFSERLRQTCEQVYQDWQLVYQEKLLQSGYAPETAETLSVAIQA
MIEGAYVLSVTKKNGRPLSAAAEQIPFLLKRS
>Mature_191_residues
AEKMSSRDKILRTASRLFRKQGYHATGLSQITAESGAPRGSLYYYFPGGKEELAQEAIQLTGERIKAYISSAISGEADPV
KAFQSYIQMMADGIEEYIIEENDDIPIVSVAAETWSFSERLRQTCEQVYQDWQLVYQEKLLQSGYAPETAETLSVAIQAM
IEGAYVLSVTKKNGRPLSAAAEQIPFLLKRS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 21420; Mature: 21289

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEKMSSRDKILRTASRLFRKQGYHATGLSQITAESGAPRGSLYYYFPGGKEELAQEAIQ
CCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHH
LTGERIKAYISSAISGEADPVKAFQSYIQMMADGIEEYIIEENDDIPIVSVAAETWSFSE
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHH
RLRQTCEQVYQDWQLVYQEKLLQSGYAPETAETLSVAIQAMIEGAYVLSVTKKNGRPLSA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHEEEEECCCCCCHHH
AAEQIPFLLKRS
HHHHCCHHHCCC
>Mature Secondary Structure 
AEKMSSRDKILRTASRLFRKQGYHATGLSQITAESGAPRGSLYYYFPGGKEELAQEAIQ
CCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHH
LTGERIKAYISSAISGEADPVKAFQSYIQMMADGIEEYIIEENDDIPIVSVAAETWSFSE
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHH
RLRQTCEQVYQDWQLVYQEKLLQSGYAPETAETLSVAIQAMIEGAYVLSVTKKNGRPLSA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHEEEEECCCCCCHHH
AAEQIPFLLKRS
HHHHCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584049; 9384377 [H]