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The map label for this gene is yoaU2 [H]

Identifier: 52785073

GI number: 52785073

Start: 1307431

End: 1307931

Strand: Reverse

Name: yoaU2 [H]

Synonym: BLi01305

Alternate gene names: 52785073

Gene position: 1307931-1307431 (Counterclockwise)

Preceding gene: 52785076

Following gene: 52785072

Centisome position: 30.97

GC content: 46.51

Gene sequence:

>501_bases
TTGGTTATAAACATGAACAGTCTTCACATCTTTGTGAAAGTCGCAGAGACTTTGAATATGACAGAAGCAGCCAACGAACT
GTATATTTCACAGCCGGCCGTGAGCAAAGCCGTAAAAAGCTTGGAAACGTCGCTCGGGGTCAAATTATTGATTCGGGATA
AACAAAACAAGATAAAACTTACGGACGCGGGAAAGGAAATCGTCGTACTGGCGAGACAGATGATCGTGATTGAAAACAAA
ATATACCAAGTGGCCGATCAAGAAAATCATCTGCTCAGAGGGAAAGTCAAGGTTGGCTCCTTCCCCGCCGTCTCAGCAAA
TATTTTGCCGCAGGCTATCGCCTCCTTCAGATCAAAGTATCCGCTCGTACAAATCGAACTGCTTGAGGGAACCTCCGACC
AAATTAAGCAATGGGTCGAAACTCGCATGGTTGATTTAGGAATCGTCGCCTCTCCCTTTGACGGATTCGAAAGCCAACCG
GATGACGGCCGTGATTCCTGA

Upstream 100 bases:

>100_bases
TTTAAACATAATCCGTCACCTTTCTTCTTTGTTTCATGTTCAGCATATGCTATATTGAGATATAACTGAAATACATTTTT
ATCATCGGGGGTATAACTAT

Downstream 100 bases:

>100_bases
GCAATATCACCACTTAAAAGACGCACCGTTCATTGATCTGAAAAAATATCAAAATGAATTGATTTTTTGTAAAGGCGGGC
ACGAAATCGCGGTATCTCAA

Product: YoaU2

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 166; Mature: 166

Protein sequence:

>166_residues
MVINMNSLHIFVKVAETLNMTEAANELYISQPAVSKAVKSLETSLGVKLLIRDKQNKIKLTDAGKEIVVLARQMIVIENK
IYQVADQENHLLRGKVKVGSFPAVSANILPQAIASFRSKYPLVQIELLEGTSDQIKQWVETRMVDLGIVASPFDGFESQP
DDGRDS

Sequences:

>Translated_166_residues
MVINMNSLHIFVKVAETLNMTEAANELYISQPAVSKAVKSLETSLGVKLLIRDKQNKIKLTDAGKEIVVLARQMIVIENK
IYQVADQENHLLRGKVKVGSFPAVSANILPQAIASFRSKYPLVQIELLEGTSDQIKQWVETRMVDLGIVASPFDGFESQP
DDGRDS
>Mature_166_residues
MVINMNSLHIFVKVAETLNMTEAANELYISQPAVSKAVKSLETSLGVKLLIRDKQNKIKLTDAGKEIVVLARQMIVIENK
IYQVADQENHLLRGKVKVGSFPAVSANILPQAIASFRSKYPLVQIELLEGTSDQIKQWVETRMVDLGIVASPFDGFESQP
DDGRDS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788748, Length=156, Percent_Identity=33.3333333333333, Blast_Score=81, Evalue=3e-17,
Organism=Escherichia coli, GI1788887, Length=158, Percent_Identity=30.379746835443, Blast_Score=79, Evalue=1e-16,
Organism=Escherichia coli, GI1788296, Length=149, Percent_Identity=28.1879194630872, Blast_Score=78, Evalue=3e-16,
Organism=Escherichia coli, GI157672245, Length=159, Percent_Identity=33.3333333333333, Blast_Score=77, Evalue=7e-16,
Organism=Escherichia coli, GI1787530, Length=144, Percent_Identity=29.1666666666667, Blast_Score=75, Evalue=2e-15,
Organism=Escherichia coli, GI145693105, Length=145, Percent_Identity=31.7241379310345, Blast_Score=74, Evalue=6e-15,
Organism=Escherichia coli, GI1790399, Length=148, Percent_Identity=28.3783783783784, Blast_Score=71, Evalue=5e-14,
Organism=Escherichia coli, GI1790208, Length=150, Percent_Identity=27.3333333333333, Blast_Score=69, Evalue=1e-13,
Organism=Escherichia coli, GI1788297, Length=160, Percent_Identity=30, Blast_Score=68, Evalue=3e-13,
Organism=Escherichia coli, GI1789204, Length=146, Percent_Identity=26.027397260274, Blast_Score=68, Evalue=3e-13,
Organism=Escherichia coli, GI1787879, Length=153, Percent_Identity=31.3725490196078, Blast_Score=67, Evalue=4e-13,
Organism=Escherichia coli, GI1788481, Length=164, Percent_Identity=30.4878048780488, Blast_Score=67, Evalue=6e-13,
Organism=Escherichia coli, GI87081904, Length=146, Percent_Identity=28.7671232876712, Blast_Score=64, Evalue=5e-12,
Organism=Escherichia coli, GI1787601, Length=129, Percent_Identity=29.4573643410853, Blast_Score=64, Evalue=7e-12,
Organism=Escherichia coli, GI1787806, Length=133, Percent_Identity=27.0676691729323, Blast_Score=61, Evalue=3e-11,
Organism=Escherichia coli, GI1788706, Length=130, Percent_Identity=28.4615384615385, Blast_Score=60, Evalue=7e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 18396; Mature: 18396

Theoretical pI: Translated: 6.55; Mature: 6.55

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVINMNSLHIFVKVAETLNMTEAANELYISQPAVSKAVKSLETSLGVKLLIRDKQNKIKL
CEEECCCEEEEEEEHHHHCHHHHHHHEEECCHHHHHHHHHHHHHCCEEEEEECCCCEEEE
TDAGKEIVVLARQMIVIENKIYQVADQENHLLRGKVKVGSFPAVSANILPQAIASFRSKY
ECCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHCC
PLVQIELLEGTSDQIKQWVETRMVDLGIVASPFDGFESQPDDGRDS
CEEEEEEECCCHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCC
>Mature Secondary Structure
MVINMNSLHIFVKVAETLNMTEAANELYISQPAVSKAVKSLETSLGVKLLIRDKQNKIKL
CEEECCCEEEEEEEHHHHCHHHHHHHEEECCHHHHHHHHHHHHHCCEEEEEECCCCEEEE
TDAGKEIVVLARQMIVIENKIYQVADQENHLLRGKVKVGSFPAVSANILPQAIASFRSKY
ECCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHCC
PLVQIELLEGTSDQIKQWVETRMVDLGIVASPFDGFESQPDDGRDS
CEEEEEEECCCHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]