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The map label for this gene is yhaM [H]

Identifier: 52784842

GI number: 52784842

Start: 1073994

End: 1074938

Strand: Direct

Name: yhaM [H]

Synonym: BLi01070

Alternate gene names: 52784842

Gene position: 1073994-1074938 (Clockwise)

Preceding gene: 52784841

Following gene: 52784843

Centisome position: 25.43

GC content: 47.83

Gene sequence:

>945_bases
ATGGCAAAAGGTATCATGCTGCACGAAGTTGGCGAGCAGGTGGATTTGTACTTGCTCATTAAATCGTCAACGAAAGGAAT
CGCAAGCAACGGGAAACCGTTTTTAACGCTGATGCTGCAGGATCAGTCCGGAGATATAGAAGCAAAGCTGTGGGACGCCA
AGCAGCAGGACGAAGTGACCTACGGCCCGCAGACGATCGTGAAAGTGGTCGGCGACATTCATCATTACCGCGGGCGGAAC
CAGCTGAAGCTGAGAAACATCAGACCTGCAGGCGAGAACGAAAACGTCAAAATCGATGACTTTCTTGAAACTGCACCGAT
TCCCAAAAACGAAATGATGGATGCGGTCACTCAATATATTTTTGAAATGAAAAACCCGAATATACAGCGAATCACAAGGC
ATCTTGTCAAAAAATACGGCAAGGAATTCATTGATTATCCGGCTGCGACGAAAAATCACCACGAGTTCGTGTCAGGTCTC
GCGTACCATGTTGTTTCCATGCTGAACCTGGCCAAATCGGTCGCAGACCTGTATCCGTCGCTCGATCGCGACCTTTTATA
CGCAGGCGTCATTCTGCATGACCTTGGAAAAGTAAAAGAACTATCCGGCCCGGTGTCCACGACATATACTGTCGAAGGGA
ACCTGCTGGGGCACATATCGATTATGGTGACAGAAATTGCAAAAGCCGCCGAAGAGCTTCAAATTGATTCAGAAGAAGTG
CTGATTCTTCAGCATTTGATTTTAAGCCATCACGGCAAACCCGAATGGGGCAGTCCGAAGCCGCCGATGGTCAAGGAAGC
GGAAATTCTTCACTATATCGACAACCTTGACGCGAAGATCAATATGATGGACAGAGCGCTCGAACGGGTTAAGCCGGGAG
AATATACCGAACGGGTCTTCGCATTGGATAACCGTTCCTTTTATAAGCCCGTTTTTCACAAATAA

Upstream 100 bases:

>100_bases
CTGCCTTCCGGAATGAAAAAGGTGGAAGGAAAGGAGATGACTAACAAATAAAAGTGTGTGCTATAATGATTTTATGTAGG
AAAACGGAGGGAGCTTTATC

Downstream 100 bases:

>100_bases
GCGTCATAACTTGTCTCCCTTTTGCATAATGTCTGGTATACAGTTTATTCAAAAAAGGGGGAAAAGCCGTGCTGCTGTTT
CCGTGGTGGGTGTACCTTTG

Product: 3'-5' exoribonuclease YhaM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 313

Protein sequence:

>314_residues
MAKGIMLHEVGEQVDLYLLIKSSTKGIASNGKPFLTLMLQDQSGDIEAKLWDAKQQDEVTYGPQTIVKVVGDIHHYRGRN
QLKLRNIRPAGENENVKIDDFLETAPIPKNEMMDAVTQYIFEMKNPNIQRITRHLVKKYGKEFIDYPAATKNHHEFVSGL
AYHVVSMLNLAKSVADLYPSLDRDLLYAGVILHDLGKVKELSGPVSTTYTVEGNLLGHISIMVTEIAKAAEELQIDSEEV
LILQHLILSHHGKPEWGSPKPPMVKEAEILHYIDNLDAKINMMDRALERVKPGEYTERVFALDNRSFYKPVFHK

Sequences:

>Translated_314_residues
MAKGIMLHEVGEQVDLYLLIKSSTKGIASNGKPFLTLMLQDQSGDIEAKLWDAKQQDEVTYGPQTIVKVVGDIHHYRGRN
QLKLRNIRPAGENENVKIDDFLETAPIPKNEMMDAVTQYIFEMKNPNIQRITRHLVKKYGKEFIDYPAATKNHHEFVSGL
AYHVVSMLNLAKSVADLYPSLDRDLLYAGVILHDLGKVKELSGPVSTTYTVEGNLLGHISIMVTEIAKAAEELQIDSEEV
LILQHLILSHHGKPEWGSPKPPMVKEAEILHYIDNLDAKINMMDRALERVKPGEYTERVFALDNRSFYKPVFHK
>Mature_313_residues
AKGIMLHEVGEQVDLYLLIKSSTKGIASNGKPFLTLMLQDQSGDIEAKLWDAKQQDEVTYGPQTIVKVVGDIHHYRGRNQ
LKLRNIRPAGENENVKIDDFLETAPIPKNEMMDAVTQYIFEMKNPNIQRITRHLVKKYGKEFIDYPAATKNHHEFVSGLA
YHVVSMLNLAKSVADLYPSLDRDLLYAGVILHDLGKVKELSGPVSTTYTVEGNLLGHISIMVTEIAKAAEELQIDSEEVL
ILQHLILSHHGKPEWGSPKPPMVKEAEILHYIDNLDAKINMMDRALERVKPGEYTERVFALDNRSFYKPVFHK

Specific function: Shows a 3'-5' exoribonuclease activity [H]

COG id: COG3481

COG function: function code R; Predicted HD-superfamily hydrolase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yhaM family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020873
- InterPro:   IPR003607
- InterPro:   IPR012340
- InterPro:   IPR004365 [H]

Pfam domain/function: PF01336 tRNA_anti [H]

EC number: NA

Molecular weight: Translated: 35596; Mature: 35464

Theoretical pI: Translated: 6.64; Mature: 6.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKGIMLHEVGEQVDLYLLIKSSTKGIASNGKPFLTLMLQDQSGDIEAKLWDAKQQDEVT
CCCCCHHHHCCCCEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCC
YGPQTIVKVVGDIHHYRGRNQLKLRNIRPAGENENVKIDDFLETAPIPKNEMMDAVTQYI
CCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCEEHHHHHHCCCCCHHHHHHHHHHHH
FEMKNPNIQRITRHLVKKYGKEFIDYPAATKNHHEFVSGLAYHVVSMLNLAKSVADLYPS
HHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
LDRDLLYAGVILHDLGKVKELSGPVSTTYTVEGNLLGHISIMVTEIAKAAEELQIDSEEV
CCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEHHHHHHHHHHHHHHHHCCCCHHH
LILQHLILSHHGKPEWGSPKPPMVKEAEILHYIDNLDAKINMMDRALERVKPGEYTERVF
HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHEE
ALDNRSFYKPVFHK
EECCCCCCCCCCCC
>Mature Secondary Structure 
AKGIMLHEVGEQVDLYLLIKSSTKGIASNGKPFLTLMLQDQSGDIEAKLWDAKQQDEVT
CCCCHHHHCCCCEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCC
YGPQTIVKVVGDIHHYRGRNQLKLRNIRPAGENENVKIDDFLETAPIPKNEMMDAVTQYI
CCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCEEHHHHHHCCCCCHHHHHHHHHHHH
FEMKNPNIQRITRHLVKKYGKEFIDYPAATKNHHEFVSGLAYHVVSMLNLAKSVADLYPS
HHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
LDRDLLYAGVILHDLGKVKELSGPVSTTYTVEGNLLGHISIMVTEIAKAAEELQIDSEEV
CCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEHHHHHHHHHHHHHHHHCCCCHHH
LILQHLILSHHGKPEWGSPKPPMVKEAEILHYIDNLDAKINMMDRALERVKPGEYTERVF
HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHEE
ALDNRSFYKPVFHK
EECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA