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The map label for this gene is yhdT [H]

Identifier: 52784800

GI number: 52784800

Start: 1030367

End: 1031740

Strand: Direct

Name: yhdT [H]

Synonym: BLi01028

Alternate gene names: 52784800

Gene position: 1030367-1031740 (Clockwise)

Preceding gene: 52784795

Following gene: 52784801

Centisome position: 24.4

GC content: 47.6

Gene sequence:

>1374_bases
ATGGACGATATTGTTAGTCTGATAATCATCGGGATTCTGATTGCTTTAACTGCTTTTTTCGTGGCATCGGAATTTGCGAT
TGTCAGAGTCAGAAGCTCCCGTATTGATCAGCTGATTGCTGAAGGAAACAAAAAGGCGGTCCGCGCAAAACAAGTGGTGT
CGGATTTGGATGAATACCTTTCAGCTTGCCAGCTCGGTATTACGATTACAGCGCTTGGACTCGGCTGGATGGGGGAGCCG
ACGGTTAAAAAGGTGCTGCATCCGGTCTTTGAAAGCCTGCATGTTTCTGGCGCTGTATCGCACGCTCTTTCAGTTGCCAT
TGCATTTTTAGTGATTACATTCCTGAACGTCGTGGTTGGAGAACTCGCTCCAAAAACCATCGCGATTCAAAAAGCCGAAC
AGATGACGCTGTGGCTGGCGGGACCTCTGCACTTTTTCAATGTTGTCATGTTCCCGTTCATCTGGACGCTGAACGCCTCA
GCCAGAGTGCTGACCGGGTTATTCGGTTTGAAGCCTGCTTCGGAAAAGGATGAATCCCATTCGGAGGAAGAGCTGCGAAT
CCTGTTATCAGAAAGCTACAAAAGCGGAGAAATCAATCCGTCTGAATATAGATATGTCAATAAAATCTTTGAATTCGACA
ATCGAATCGCCAAAGAAATTATGGTGCCGCGTACGGAAATCGCCTCTGTCCCGCTGGATATGCCGATTGATGAGGCCATT
TCGGTCATGCTGCAAGAAAAATATACGCGCTGGCCCGTCTATAAAGGCGATAAGGATCATGTCATCGGCATGATCAATAC
GAAACAGCTGTTTACGGATATGCTCATGATGTCAGAGGCAGAGAAAAAGCTGCTGTCTCTTGAAGCCTACGTCCGTCCGG
TTATTGAAGTCATTGAAACCGTGCCTGTTCAAAAGCTGCTGATCAAAATGCAGCGGGAACGGATTCACATGGCGATCTTA
ACGGATGAGTACGGAGGGACATCGGGTCTTGTGACGGCCGAGGATATTCTTGAAGAAATCGTCGGGGAGATCAGGGACGA
ATTCGATGAAGACGAAAAACCGCTCATCGAAAAAGTTTCCGATCACGAATACATCATGGATGGAAAAGTGAGAATCGATC
AGGTCAATGAGCTGTTTGAAGACGATATCGAGGAAGAGGAAGTCGAAACTGTCGGCGGACTTGTGCTGAAAGAAAACATA
GATATCGCGGAAGGCCAGGCGGTGCATATCGGCTCTTACACGATAACGGTTCTCGAAATGGAAGGGCGTCTGATTAAGCA
CGTCGAAGTCAAGCGGGAACAAACAACAGAACATGTAGAGCTGGCACCGGCAAATCCGGTCGTCGTAAACGAAATCACCT
TGAGCGAAAAATAG

Upstream 100 bases:

>100_bases
CCTCTGCATAGTCATTTTTACAGAACGCACATCAGCCTTATTAAGGGAATTTGAATTCATCAGGAGGTGACTCCTTATCC
TTTGTGAAGGATAAGGTTAA

Downstream 100 bases:

>100_bases
CTCAAGGTGATTTTTTATTTTAAGAAAAAAGTCATTTGAACAGGAACATTCGTTCGTATATAATGGGAACAAACGTTCTG
TGTGAGAGGTGATTGATTTG

Product: YhdT

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 457; Mature: 457

Protein sequence:

>457_residues
MDDIVSLIIIGILIALTAFFVASEFAIVRVRSSRIDQLIAEGNKKAVRAKQVVSDLDEYLSACQLGITITALGLGWMGEP
TVKKVLHPVFESLHVSGAVSHALSVAIAFLVITFLNVVVGELAPKTIAIQKAEQMTLWLAGPLHFFNVVMFPFIWTLNAS
ARVLTGLFGLKPASEKDESHSEEELRILLSESYKSGEINPSEYRYVNKIFEFDNRIAKEIMVPRTEIASVPLDMPIDEAI
SVMLQEKYTRWPVYKGDKDHVIGMINTKQLFTDMLMMSEAEKKLLSLEAYVRPVIEVIETVPVQKLLIKMQRERIHMAIL
TDEYGGTSGLVTAEDILEEIVGEIRDEFDEDEKPLIEKVSDHEYIMDGKVRIDQVNELFEDDIEEEEVETVGGLVLKENI
DIAEGQAVHIGSYTITVLEMEGRLIKHVEVKREQTTEHVELAPANPVVVNEITLSEK

Sequences:

>Translated_457_residues
MDDIVSLIIIGILIALTAFFVASEFAIVRVRSSRIDQLIAEGNKKAVRAKQVVSDLDEYLSACQLGITITALGLGWMGEP
TVKKVLHPVFESLHVSGAVSHALSVAIAFLVITFLNVVVGELAPKTIAIQKAEQMTLWLAGPLHFFNVVMFPFIWTLNAS
ARVLTGLFGLKPASEKDESHSEEELRILLSESYKSGEINPSEYRYVNKIFEFDNRIAKEIMVPRTEIASVPLDMPIDEAI
SVMLQEKYTRWPVYKGDKDHVIGMINTKQLFTDMLMMSEAEKKLLSLEAYVRPVIEVIETVPVQKLLIKMQRERIHMAIL
TDEYGGTSGLVTAEDILEEIVGEIRDEFDEDEKPLIEKVSDHEYIMDGKVRIDQVNELFEDDIEEEEVETVGGLVLKENI
DIAEGQAVHIGSYTITVLEMEGRLIKHVEVKREQTTEHVELAPANPVVVNEITLSEK
>Mature_457_residues
MDDIVSLIIIGILIALTAFFVASEFAIVRVRSSRIDQLIAEGNKKAVRAKQVVSDLDEYLSACQLGITITALGLGWMGEP
TVKKVLHPVFESLHVSGAVSHALSVAIAFLVITFLNVVVGELAPKTIAIQKAEQMTLWLAGPLHFFNVVMFPFIWTLNAS
ARVLTGLFGLKPASEKDESHSEEELRILLSESYKSGEINPSEYRYVNKIFEFDNRIAKEIMVPRTEIASVPLDMPIDEAI
SVMLQEKYTRWPVYKGDKDHVIGMINTKQLFTDMLMMSEAEKKLLSLEAYVRPVIEVIETVPVQKLLIKMQRERIHMAIL
TDEYGGTSGLVTAEDILEEIVGEIRDEFDEDEKPLIEKVSDHEYIMDGKVRIDQVNELFEDDIEEEEVETVGGLVLKENI
DIAEGQAVHIGSYTITVLEMEGRLIKHVEVKREQTTEHVELAPANPVVVNEITLSEK

Specific function: Unknown

COG id: COG1253

COG function: function code R; Hemolysins and related proteins containing CBS domains

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

Organism=Homo sapiens, GI310128564, Length=390, Percent_Identity=46.4102564102564, Blast_Score=378, Evalue=1e-105,
Organism=Escherichia coli, GI145693175, Length=427, Percent_Identity=28.8056206088993, Blast_Score=157, Evalue=2e-39,
Organism=Escherichia coli, GI1790664, Length=447, Percent_Identity=23.7136465324385, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI1786879, Length=255, Percent_Identity=33.3333333333333, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI87082033, Length=279, Percent_Identity=24.3727598566308, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1788119, Length=238, Percent_Identity=29.8319327731092, Blast_Score=88, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17539402, Length=262, Percent_Identity=26.3358778625954, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016169
- InterPro:   IPR000644
- InterPro:   IPR002550
- InterPro:   IPR005170 [H]

Pfam domain/function: PF00571 CBS; PF03471 CorC_HlyC; PF01595 DUF21 [H]

EC number: NA

Molecular weight: Translated: 51289; Mature: 51289

Theoretical pI: Translated: 4.46; Mature: 4.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDIVSLIIIGILIALTAFFVASEFAIVRVRSSRIDQLIAEGNKKAVRAKQVVSDLDEYL
CHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
SACQLGITITALGLGWMGEPTVKKVLHPVFESLHVSGAVSHALSVAIAFLVITFLNVVVG
HHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ELAPKTIAIQKAEQMTLWLAGPLHFFNVVMFPFIWTLNASARVLTGLFGLKPASEKDESH
HCCCCHHEEECHHHEEEEEECHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCC
SEEELRILLSESYKSGEINPSEYRYVNKIFEFDNRIAKEIMVPRTEIASVPLDMPIDEAI
CHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCHHHHH
SVMLQEKYTRWPVYKGDKDHVIGMINTKQLFTDMLMMSEAEKKLLSLEAYVRPVIEVIET
HHHHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VPVQKLLIKMQRERIHMAILTDEYGGTSGLVTAEDILEEIVGEIRDEFDEDEKPLIEKVS
CCHHHHHHHHHHHHEEEEEEEECCCCCCCCEEHHHHHHHHHHHHHHHCCCCCCHHHHHCC
DHEYIMDGKVRIDQVNELFEDDIEEEEVETVGGLVLKENIDIAEGQAVHIGSYTITVLEM
CCCEEECCCEEHHHHHHHHHCCCCHHHHHHHCCEEEECCCCCCCCCEEEECCEEEEEEEE
EGRLIKHVEVKREQTTEHVELAPANPVVVNEITLSEK
CCCHHHHHHHHHHHCCCCEEECCCCCEEEEEEECCCC
>Mature Secondary Structure
MDDIVSLIIIGILIALTAFFVASEFAIVRVRSSRIDQLIAEGNKKAVRAKQVVSDLDEYL
CHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
SACQLGITITALGLGWMGEPTVKKVLHPVFESLHVSGAVSHALSVAIAFLVITFLNVVVG
HHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ELAPKTIAIQKAEQMTLWLAGPLHFFNVVMFPFIWTLNASARVLTGLFGLKPASEKDESH
HCCCCHHEEECHHHEEEEEECHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCC
SEEELRILLSESYKSGEINPSEYRYVNKIFEFDNRIAKEIMVPRTEIASVPLDMPIDEAI
CHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCHHHHH
SVMLQEKYTRWPVYKGDKDHVIGMINTKQLFTDMLMMSEAEKKLLSLEAYVRPVIEVIET
HHHHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VPVQKLLIKMQRERIHMAILTDEYGGTSGLVTAEDILEEIVGEIRDEFDEDEKPLIEKVS
CCHHHHHHHHHHHHEEEEEEEECCCCCCCCEEHHHHHHHHHHHHHHHCCCCCCHHHHHCC
DHEYIMDGKVRIDQVNELFEDDIEEEEVETVGGLVLKENIDIAEGQAVHIGSYTITVLEM
CCCEEECCCEEHHHHHHHHHCCCCHHHHHHHCCEEEECCCCCCCCCEEEECCEEEEEEEE
EGRLIKHVEVKREQTTEHVELAPANPVVVNEITLSEK
CCCHHHHHHHHHHHCCCCEEECCCCCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]